View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11864_high_8 (Length: 483)
Name: NF11864_high_8
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11864_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 13 - 469
Target Start/End: Complemental strand, 11396053 - 11395597
Alignment:
| Q |
13 |
cacagactatttttgacaaaaccttaagaattcattactgccctttaaagttttgtttatgaattgtttttgtaccaaatattgtaactttcagcagaaa |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11396053 |
cacaaactatttttgacaaaaccttaagaattcattactgccctttaaagttttgtttatgaattgtttttgtaccaaatattgtaactttcagaagaaa |
11395954 |
T |
|
| Q |
113 |
caaacaaaaaccaaacatgtgcttagttagtgtcttacgtatattcgttataattgtgacattatattattatctgtaacagaatcaaaacagcaaagat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11395953 |
caaacaaaaaccaaacatgtgcttagttagtgtcttacgtatattcgttataattgtgacattatattattatctgtaacagaatcaaaatagcaaagat |
11395854 |
T |
|
| Q |
213 |
aagatgaaccataccaaataatgtgacattatccatcacgctacgctttccaaattccaacacctataggcttattatatatatacgcaaacacacacta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11395853 |
aagatgaaccataccaaataatgtgacattatccatcacgctacgctttccaaattccaacacctataggcttattatatatatacgcaaacacacacta |
11395754 |
T |
|
| Q |
313 |
aaccaaaaatcaacacttataagttaatttggccgaatactaaaaaccacnnnnnnnctagaattcattcctttttgcttaagcgttttctacactaata |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11395753 |
aaccaaaaatcaacacttataagttaatttggccgaatactaaaaagcactttttttctagaattcattcctttttgcttaagcgttttctacactaata |
11395654 |
T |
|
| Q |
413 |
tggcatcttcttctcctgtttcatatgataacaaaaaactagaggaaggtattatgt |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11395653 |
tggcatcttcttctcctgtttcatatgataacaaaaaactagaggaaggtattatgt |
11395597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University