View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11864_high_9 (Length: 468)
Name: NF11864_high_9
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11864_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Original strand, 38868257 - 38868694
Alignment:
| Q |
19 |
tcagctgcaccacagaaattaacctggcctcaaatctagtggctttgaatccttcaatatgtcaaagttatcttctagtcttatatagactttcctctca |
118 |
Q |
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| T |
38868257 |
tcagctgcaccacagaaattaacctggtctcaaatctagtggctttgaatccttcaatatgtcaaagttatcttctagtcttatatagactttcctctca |
38868356 |
T |
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| Q |
119 |
aagacattcctacagtcttccaaagtacttttgattatggtaaaagcatataactgttctaatttgtgaacatcttcctcgaaactgatcatggtatagt |
218 |
Q |
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| T |
38868357 |
aagacattcctatagtcttccaaagtacttttgattatggtaaaagcatataactgttctaatttgtgaacatcttcctcgaaactgatcatggtatagt |
38868456 |
T |
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| Q |
219 |
cctcttcaactgtacaccaagacaaatccagcaacctcgatttgtttagctttccaatctgagtaattgtcattcaattcccatcaatcaaacgtagaat |
318 |
Q |
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| T |
38868457 |
cctcttcaactgtacaccaagacaaatccagcaacctcgatttgtttagctttccaatc-gagtaattgtcattcaattcccatcaatcaaacgtagaat |
38868555 |
T |
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| Q |
319 |
tctgagctggccctcattctttgagtctcaataatcagttagtagtaaaatggataaatctcatgttctggaccatccaattttataggaagtattcacg |
418 |
Q |
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| T |
38868556 |
tctgagctggccctcattctttgagtctcaataatcagttagtagtaaaatggataaatctcatgttctggaccatccaattttataggaagtattcacg |
38868655 |
T |
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| Q |
419 |
agatgccaccgaaagaggcacaacatgctagctgcttca |
457 |
Q |
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| T |
38868656 |
agatgccaccgaaagaggcacaacatgctagctgcttca |
38868694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 200 - 271
Target Start/End: Complemental strand, 38806821 - 38806751
Alignment:
| Q |
200 |
aaactgatcatggtatagtcctcttcaactgtacaccaagacaaatccagcaacctcgatttgtttagcttt |
271 |
Q |
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| T |
38806821 |
aaactgatcatggta-agtcctcttcgattgtacaccgagacaaatccagaaacctcaatttgtttagcttt |
38806751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 38849438 - 38849502
Alignment:
| Q |
207 |
tcatggtatagtcctcttcaactgtacaccaagacaaatccagcaacctcgatttgtttagcttt |
271 |
Q |
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| T |
38849438 |
tcatggtattgtcctcttcaactatacactaagacaaatccaacaacctgaatttgtttagcttt |
38849502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 444
Target Start/End: Original strand, 38869064 - 38869102
Alignment:
| Q |
406 |
ggaagtattcacgagatgccaccgaaagaggcacaacat |
444 |
Q |
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| T |
38869064 |
ggaagtattcacgagaagccaccgaaagaggcacaacat |
38869102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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