View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11864_low_1 (Length: 703)

Name: NF11864_low_1
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11864_low_1
NF11864_low_1
[»] chr1 (3 HSPs)
chr1 (11-689)||(32730242-32730914)
chr1 (39-689)||(17404681-17405332)
chr1 (125-173)||(5413081-5413129)
[»] chr6 (5 HSPs)
chr6 (39-288)||(13698727-13698977)
chr6 (539-640)||(6782551-6782653)
chr6 (319-446)||(13698993-13699120)
chr6 (131-173)||(19248579-19248621)
chr6 (587-643)||(31439058-31439114)
[»] chr7 (8 HSPs)
chr7 (116-393)||(18132120-18132396)
chr7 (116-393)||(18143907-18144183)
chr7 (125-173)||(6214759-6214807)
chr7 (116-179)||(7704411-7704474)
chr7 (562-624)||(18144347-18144409)
chr7 (562-627)||(7703965-7704030)
chr7 (562-624)||(18132560-18132622)
chr7 (125-173)||(19480649-19480697)
[»] chr5 (4 HSPs)
chr5 (109-347)||(34940178-34940416)
chr5 (125-183)||(34424438-34424496)
chr5 (293-369)||(4825387-4825463)
chr5 (125-173)||(39366217-39366265)
[»] chr4 (6 HSPs)
chr4 (142-363)||(29536898-29537119)
chr4 (125-173)||(48104360-48104408)
chr4 (125-183)||(12833573-12833631)
chr4 (125-173)||(54824722-54824770)
chr4 (134-231)||(32152604-32152701)
chr4 (128-184)||(37971665-37971721)
[»] scaffold0394 (1 HSPs)
scaffold0394 (125-173)||(3462-3510)
[»] chr8 (2 HSPs)
chr8 (125-173)||(19298057-19298105)
chr8 (109-197)||(31419591-31419678)
[»] chr2 (4 HSPs)
chr2 (268-336)||(11980900-11980968)
chr2 (562-638)||(5539491-5539567)
chr2 (133-245)||(32487324-32487436)
chr2 (577-617)||(33007995-33008035)
[»] scaffold0094 (1 HSPs)
scaffold0094 (562-641)||(23735-23814)
[»] scaffold1185 (1 HSPs)
scaffold1185 (579-648)||(1699-1768)


Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 11 - 689
Target Start/End: Complemental strand, 32730914 - 32730242
Alignment:
Q  11 caaaggcaaatcatcccacaaaaggacaaaggtgtgcaaagataacaaccccaaaccagttacaatgtcacggatgccatataaacgaaggcatcattaa 110  Q
    |||||||||||||||||||||||||       ||||||||||||||| | |||||| |||||||| ||||||||||||||| ||| ||||||||||||||    
T  32730914 caaaggcaaatcatcccacaaaagg-------tgtgcaaagataacagctccaaacaagttacaacgtcacggatgccataaaaatgaaggcatcattaa 32730822  T
Q  111 aaaacaacaataataattacaagtggacacccatacacaaaagaggatgtttccaccattcataaaaattgtaattgaacaacacctgttttgatttcac 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  32730821 aaaacaacaataataattacaagtggacacccatacacaaaagaggatgtttccaccattcataaaaattgtaaatgaacgacacctgttttgatttcac 32730722  T
Q  211 tcacaggaaggaattgagcttaaccttctcaatgagagctgaagggtctaaagccatatttttaaagatacaattatttcaatccttccaaagaacccaa 310  Q
     |||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32730721 ccacaagaaggaattgagcttaaccttctcaatgcgagctgaagggtctaaagccgtatttttaaagatacaattatttcaatccttccaaagaacccaa 32730622  T
Q  311 acacaggcaagccaaataactttaaagaaaatgtgtggagattgcggcatgcccgccatataagcaaactgaaccaagtgatgtctacgcgaattaggtg 410  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||    
T  32730621 acacaagcaagccaaataactttaaagaaaatgtgtggagatcgcggcatgcctgccatataagcaaactgaacgaagtgatgtctaagagaattaggtg 32730522  T
Q  411 caacaaagtctatatccagccaagttcgaagatgatgccatac-ttgtcagatgtcgcacaccctaggaaaagatgatttgttgtttctgaagtgccgca 509  Q
    |||||||||||||||| ||||||||||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| | |||||||||||||||||    
T  32730521 caacaaagtctatatcaagccaagttcgaacatgatgccatacgctgtcagatgtcgcacagcctaggaaaagatgatttttcgtttctgaagtgccgca 32730422  T
Q  510 gtttgacacacatggaagatcattagtgtgaagaatgctccttcgtgacaatttgtcttttgtcggtaatctgttacgaaggaggcgccacgcaaacaag 609  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  32730421 gtttgacacatacggaagatcattagtgtgaagaatgctccttcgtgacaaattgtcttttgtcggtaatctgttacgaaggagtcgccacgcaaacaag 32730322  T
Q  610 gaaaccttcgaaggaatattcttatgccaaacgtggtcagtttgattcttaaccacaggttcatcaattgtagtaaaaaa 689  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||    
T  32730321 gaaaccttcgaaggaatattcttatgccaaacgtggtcagtttgattcctaaccacgggttcatcagttgtagtaaaaaa 32730242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 39 - 689
Target Start/End: Complemental strand, 17405332 - 17404681
Alignment:
Q  39 aaggtgtgcaaagataacaaccccaaaccagttacaatgtcacggatgccatataaacgaaggcatcattaaaaaacaacaataataattacaagtggac 138  Q
    |||||||||||||||||   | || ||  |||||||||| ||  ||||||||| || |||||||||||| || |||||||| |||||||||||  |||||    
T  17405332 aaggtgtgcaaagataaaggcacccaaaaagttacaatgccaatgatgccataaaagcgaaggcatcatcaagaaacaacagtaataattacacatggac 17405233  T
Q  139 acccatacacaaaagaggatgtttccaccattcataaaaattgtaattgaacaacacctgttttgatttcactcacaggaaggaattgagcttaaccttc 238  Q
    |||||| |||||||  |||||| ||||||| |||| |||| | ||||||||| || | |||||||||||||  |||| ||| ||||| |||||||||||     
T  17405232 acccatgcacaaaaacggatgtctccaccagtcatgaaaactataattgaacgacgcatgttttgatttcatccacaagaatgaatttagcttaacctta 17405133  T
Q  239 tcaatgagagctgaagggtctaaagccatatttttaaagatacaattatttcaatccttccaaagaacccaaacacaggcaagccaaataactttaaaga 338  Q
    ||||||||| |||| || ||| ||||| ||||||||||||||  ||||||||  ||||||||| ||||||| ||||||||||||   |||||||||||||    
T  17405132 tcaatgagaactgatggatctgaagccgtatttttaaagatatgattatttctttccttccaatgaacccagacacaggcaagcatgataactttaaaga 17405033  T
Q  339 aaatgtgtggagattgcggcatgcccgccatataagcaaactgaaccaagtgatgtctacgcgaattaggtgcaacaaagtctatatccagccaagttcg 438  Q
    | ||||||| |||| | |||||| || ||||||||| ||||||||| || ||||||| | ||  |||||  ||||  ||||| ||| | |||||| |  |    
T  17405032 atatgtgtgaagatcgtggcatgtcctccatataagaaaactgaacaaaatgatgtcgaagcatattagaagcaatgaagtcaatacctagccaaatctg 17404933  T
Q  439 aagatgatgccatac-ttgtcagatgtcgcacaccctaggaaaagatgatttgttgtttctgaagtgccgcagtttgacacacatggaagatcattagtg 537  Q
     | ||||||||| ||   |||| |  || |||| ||||||||||| |||| ||| ||||||||||| ||||||| ||  ||||||| ||||| |||||      
T  17404932 cacatgatgccaaacaccgtcaaaaatctcacagcctaggaaaaggtgatgtgtcgtttctgaagtaccgcagtctgctacacatgcaagattattagat 17404833  T
Q  538 tgaagaatgctccttcgtgacaatttgtcttttgtcggtaatctgttacgaaggaggcgccacgcaaacaaggaaaccttcgaaggaatattcttatgcc 637  Q
    ||||||| ||||||||| | ||| ||||||||  | |||||||| || |||||||| || ||| | |||||  |||| || ||| |||||| |||||| |    
T  17404832 tgaagaaggctccttcgggccaaattgtctttatttggtaatctattgcgaaggagacgtcacacgaacaaataaactttagaatgaatatacttatgtc 17404733  T
Q  638 aaacgtggtcagtttgattcttaaccacaggttcatcaattgtagtaaaaaa 689  Q
    ||| ||  ||||   ||||| |||||| |||| ||||  | |||||||||||    
T  17404732 aaatgtcatcagcgagattcctaaccataggtacatctgtcgtagtaaaaaa 17404681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 5413081 - 5413129
Alignment:
Q  125 aattacaagtggacacccatacacaaaagaggatgtttccaccattcat 173  Q
    ||||||||||| ||| |||||||||||||  ||||||||||||| ||||    
T  5413081 aattacaagtgtacatccatacacaaaagcagatgtttccaccaatcat 5413129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 2e-48; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 39 - 288
Target Start/End: Original strand, 13698727 - 13698977
Alignment:
Q  39 aaggtgtgcaaagataacaaccccaaaccagttacaatgtcacggatgccatataaacgaaggcatcattaa-aaaacaacaataataattacaagtgga 137  Q
    ||||||||||||||||| | | || ||  ||||||  |||||| ||||||| ||||  |  |||||||| || |||||||| | ||||||||||||||||    
T  13698727 aaggtgtgcaaagataaaagcacccaaaaagttactgtgtcactgatgccagataattgggggcatcataaacaaaacaacgaaaataattacaagtgga 13698826  T
Q  138 cacccatacacaaaagaggatgtttccaccattcataaaaattgtaattgaacaacacctgttttgatttcactcacaggaaggaattgagcttaacctt 237  Q
    ||||||||||||  || ||||||||||||||||||| |||| ||||| ||||  ||||||||||||||||||  |||| ||||||||| ||||| |||||    
T  13698827 cacccatacacacgagcggatgtttccaccattcatgaaaactgtaactgaatgacacctgttttgatttcatccacaagaaggaattaagctttacctt 13698926  T
Q  238 ctcaatgagagctgaagggtctaaagccatatttttaaagatacaattatt 288  Q
     ||||||||| |||| |||||| |||||||||||||||| |||| ||||||    
T  13698927 atcaatgagaactgacgggtctgaagccatatttttaaaaatactattatt 13698977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 539 - 640
Target Start/End: Original strand, 6782551 - 6782653
Alignment:
Q  539 gaagaatgctccttcgtgacaatttgtcttttgtcgg-taatctgttacgaaggaggcgccacgcaaacaaggaaaccttcgaaggaatattcttatgcc 637  Q
    |||||||||||||||| | ||| || |||||||| || ||||||||| ||||| ||||||||  | |||||||| |||||||| || |||||| ||||||    
T  6782551 gaagaatgctccttcgcgccaaattatcttttgttggataatctgttgcgaagaaggcgccaaacgaacaaggagaccttcgatgggatattcctatgcc 6782650  T
Q  638 aaa 640  Q
    |||    
T  6782651 aaa 6782653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 319 - 446
Target Start/End: Original strand, 13698993 - 13699120
Alignment:
Q  319 aagccaaataactttaaagaaaatgtgtggagattgcggcatgcccgccatataagcaaactgaaccaagtgatgtctacgcgaattaggtgcaacaaag 418  Q
    |||||| |||||||| ||||||||||||| |||  ||| ||| ||| ||||||||| ||||||||   ||||||||| | |   |||||  ||||||||     
T  13698993 aagccatataactttgaagaaaatgtgtgaagaacgcgacatacccaccatataagaaaactgaatatagtgatgtcgaagaatattagaagcaacaaaa 13699092  T
Q  419 tctatatccagccaagttcgaagatgat 446  Q
    |||||| | ||||||||||||| |||||    
T  13699093 tctataccaagccaagttcgaacatgat 13699120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 19248579 - 19248621
Alignment:
Q  131 aagtggacacccatacacaaaagaggatgtttccaccattcat 173  Q
    |||| |||||||||||||||||| |||||||||||||| ||||    
T  19248579 aagttgacacccatacacaaaagtggatgtttccaccaatcat 19248621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 587 - 643
Target Start/End: Complemental strand, 31439114 - 31439058
Alignment:
Q  587 gaaggaggcgccacgcaaacaaggaaaccttcgaaggaatattcttatgccaaacgt 643  Q
    ||||||| |||||| |||| || || ||||||||||||||  |||||||||||||||    
T  31439114 gaaggagacgccacacaaaaaacgacaccttcgaaggaatggtcttatgccaaacgt 31439058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 2e-45; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 116 - 393
Target Start/End: Original strand, 18132120 - 18132396
Alignment:
Q  116 aacaataataattacaagtggacacccatacacaaaagaggatgtttccaccattcataaaaattgtaattgaacaacacctgttttgatttcactcaca 215  Q
    ||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||  ||| | ||  | |||| ||||| |||||||||||  ||||    
T  18132120 aacaaaaataattccaagtggacacccatacacaaaa-agggtgtttccaccattcatggaaagtatatataaacatcacctattttgatttcaaccaca 18132218  T
Q  216 ggaaggaattgagcttaaccttctcaatgagagctgaagggtctaaagccatatttttaaagatacaattatttcaatccttccaaagaacccaaacaca 315  Q
      |||||||||| ||| |||||||| ||||||| |||  |||||||| ||||||||||||| |||   ||||| |  | |||||| | || |||||||||    
T  18132219 aaaaggaattgaccttgaccttctcgatgagagttgatcggtctaaaaccatatttttaaaaatattgttattacgctacttccacaaaatccaaacaca 18132318  T
Q  316 ggcaagccaaataactttaaagaaaatgtgtggagattgcggcatgcccgccatataagcaaactgaaccaagtgatg 393  Q
    ||||||||| ||||| ||||||||||| |||| ||||  |||||| ||||||||||| | ||||||||| ||||||||    
T  18132319 ggcaagccatataaccttaaagaaaatatgtgaagatcacggcatacccgccatatacgaaaactgaacaaagtgatg 18132396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 116 - 393
Target Start/End: Original strand, 18143907 - 18144183
Alignment:
Q  116 aacaataataattacaagtggacacccatacacaaaagaggatgtttccaccattcataaaaattgtaattgaacaacacctgttttgatttcactcaca 215  Q
    ||||| ||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||  ||| | ||  | |||| ||||| |||||||||||  ||||    
T  18143907 aacaaaaataattccaagtggacacccttacacaaaa-agggtgtttccaccattcatggaaagtatatataaacatcacctattttgatttcaaccaca 18144005  T
Q  216 ggaaggaattgagcttaaccttctcaatgagagctgaagggtctaaagccatatttttaaagatacaattatttcaatccttccaaagaacccaaacaca 315  Q
      |||||||||| ||| |||||||| ||||||| |||  |||||||| ||||||||||||| |||   ||||| |  | |||||| | || |||||||||    
T  18144006 aaaaggaattgaccttgaccttctcgatgagagttgatcggtctaaaaccatatttttaaaaatattgttattacgctacttccacaaaatccaaacaca 18144105  T
Q  316 ggcaagccaaataactttaaagaaaatgtgtggagattgcggcatgcccgccatataagcaaactgaaccaagtgatg 393  Q
    ||||| ||| ||||| ||||||||||| |||| ||||  |||||| ||||||||||| | ||||||||| ||||||||    
T  18144106 ggcaaaccatataaccttaaagaaaatatgtgaagatcacggcatacccgccatatacgaaaactgaacaaagtgatg 18144183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 6214759 - 6214807
Alignment:
Q  125 aattacaagtggacacccatacacaaaagaggatgtttccaccattcat 173  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6214759 aattacaagtggacacccatacacaaaagaggatgtttccaccaatcat 6214807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 7704474 - 7704411
Alignment:
Q  116 aacaataataattacaagtggacacccatacacaaaagaggatgtttccaccattcataaaaat 179  Q
    ||||| ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  7704474 aacaaaaatgattacaagtggacacccatacacaagagagggtgtttccaccattcatataaat 7704411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 562 - 624
Target Start/End: Original strand, 18144347 - 18144409
Alignment:
Q  562 ttgtcttttgtcggtaatctgttacgaaggaggcgccacgcaaacaaggaaaccttcgaagga 624  Q
    ||||||||||||||||||| ||| |||||||| |||||||| ||||| || ||||| ||||||    
T  18144347 ttgtcttttgtcggtaatcagttgcgaaggagacgccacgcgaacaatgacacctttgaagga 18144409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 562 - 627
Target Start/End: Complemental strand, 7704030 - 7703965
Alignment:
Q  562 ttgtcttttgtcggtaatctgttacgaaggaggcgccacgcaaacaaggaaaccttcgaaggaata 627  Q
    |||||||| || |||||||| ||| |||| || ||||||||||||||||||| ||| |||||||||    
T  7704030 ttgtctttagtaggtaatctattatgaagcagacgccacgcaaacaaggaaatctttgaaggaata 7703965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 562 - 624
Target Start/End: Original strand, 18132560 - 18132622
Alignment:
Q  562 ttgtcttttgtcggtaatctgttacgaaggaggcgccacgcaaacaaggaaaccttcgaagga 624  Q
    ||||||||||||||||||| ||| |||||||| |||||||  ||||| || ||||| ||||||    
T  18132560 ttgtcttttgtcggtaatcagttgcgaaggagacgccacgtgaacaatgacacctttgaagga 18132622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 19480649 - 19480697
Alignment:
Q  125 aattacaagtggacacccatacacaaaagaggatgtttccaccattcat 173  Q
    ||||||||||| ||||||||||| | ||| |||||||||||||| ||||    
T  19480649 aattacaagtgaacacccatacaaagaaggggatgtttccaccagtcat 19480697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 109 - 347
Target Start/End: Complemental strand, 34940416 - 34940178
Alignment:
Q  109 aaaaaacaacaataataattacaagtggacacccatacacaaaagaggatgtttccaccattcataaaaattgtaattgaacaacacctgttttgatttc 208  Q
    |||||||| ||| |||||||||  ||||||||||| ||| | ||| | |||||| ||||| || ||| || || |||||||| |||||||||||||||||    
T  34940416 aaaaaacatcaaaaataattactcgtggacacccaaacaaagaagcgaatgttttcaccaatcgtaataactgaaattgaacgacacctgttttgatttc 34940317  T
Q  209 actcacaggaaggaattgagcttaaccttctcaatgagagctgaagggtctaaagccatatttttaaagatacaattatttcaatccttccaaagaaccc 308  Q
    |  |||| ||| || || ||||||||||| ||||||||| | || || ||| ||||  || |||||||||||   ||||| |  || ||||| ||||| |    
T  34940316 aaccacaagaaagagtttagcttaaccttgtcaatgagaacagatggatctgaagctctacttttaaagatatggttattcctctcattccatagaacac 34940217  T
Q  309 aaacacaggcaagccaaataactttaaagaaaatgtgtg 347  Q
    |||| || |||||||| | |||||||||||| |||||||    
T  34940216 aaacgcaagcaagccagacaactttaaagaatatgtgtg 34940178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 34424496 - 34424438
Alignment:
Q  125 aattacaagtggacacccatacacaaaagaggatgtttccaccattcataaaaattgta 183  Q
    ||||||||||||||||| || |||||||| |||||||||||||| |||| | |||||||    
T  34424496 aattacaagtggacacctatgcacaaaagcggatgtttccaccaatcatgataattgta 34424438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 4825387 - 4825463
Alignment:
Q  293 tccttccaaagaacccaaacacaggcaagccaaataactttaaagaaaatgtgtggagattgcggcatgcccgccat 369  Q
    |||||||||| |||||||||||| || ||||||| |  ||||||||||| ||||| |||| ||| ||| ||||||||    
T  4825387 tccttccaaaaaacccaaacacaagcgagccaaacagttttaaagaaaaggtgtgaagatcgcgtcatacccgccat 4825463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 39366265 - 39366217
Alignment:
Q  125 aattacaagtggacacccatacacaaaagaggatgtttccaccattcat 173  Q
    ||||||||||||||||||||||| | ||| ||||| |||||||| ||||    
T  39366265 aattacaagtggacacccatacaaagaaggggatgattccaccagtcat 39366217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 142 - 363
Target Start/End: Original strand, 29536898 - 29537119
Alignment:
Q  142 catacacaaaagaggatgtttccaccattcataaaaattgtaattgaacaacacctgttttgatttcactcacaggaaggaattgagcttaaccttctca 241  Q
    |||||| ||||| ||||||||||| || |||| |||| | ||| | ||| || | |||||||||||||   ||| |||||||||  |||| || ||||||    
T  29536898 catacataaaagcggatgtttccatcaatcatgaaaactataaataaacgacgcttgttttgatttcatcgacaagaaggaattacgcttgactttctca 29536997  T
Q  242 atgagagctgaagggtctaaagccata-tttttaaagatacaattatttcaatccttccaaagaacccaaacacaggcaagccaaataactttaaagaaa 340  Q
    ||||||||| |  ||| | ||  |||| ||||||||||||| ||||||||  | |||||| |||||||||||||| ||||| |||||||| ||||| |||    
T  29536998 atgagagctaagtggtttgaaatcatattttttaaagatacgattatttcgtttcttccagagaacccaaacacaagcaaggcaaataaccttaaa-aaa 29537096  T
Q  341 atgtgtggagattgcggcatgcc 363  Q
    ||||||| |||| | ||||||||    
T  29537097 atgtgtgtagatcgaggcatgcc 29537119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 48104360 - 48104408
Alignment:
Q  125 aattacaagtggacacccatacacaaaagaggatgtttccaccattcat 173  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  48104360 aattacaagtggacacccatacacaaaagcggatgtttccaccaatcat 48104408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 12833631 - 12833573
Alignment:
Q  125 aattacaagtggacacccatacacaaaagaggatgtttccaccattcataaaaattgta 183  Q
    |||||||||| ||||||||| |||||||| |||||||||||||| |||| | |||||||    
T  12833631 aattacaagttgacacccatgcacaaaagcggatgtttccaccaatcatgataattgta 12833573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 54824722 - 54824770
Alignment:
Q  125 aattacaagtggacacccatacacaaaagaggatgtttccaccattcat 173  Q
    ||||||||||| |||||||| |||||||| |||||||||||||| ||||    
T  54824722 aattacaagtgaacacccatgcacaaaagcggatgtttccaccaatcat 54824770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 32152604 - 32152701
Alignment:
Q  134 tggacacccatacacaaaagaggatgtttccaccattcataaaaattgtaattgaacaacacctgttttgatttcactcacaggaaggaattgagctt 231  Q
    |||| |||||||||||||||| ||||||||||||| |||| | || ||||| ||||   |||||  ||||||||||| || | ||| ||||| |||||    
T  32152604 tggagacccatacacaaaagaagatgtttccaccagtcatgataactgtaactgaatgccacctactttgatttcacccaaaagaatgaattcagctt 32152701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 37971721 - 37971665
Alignment:
Q  128 tacaagtggacacccatacacaaaagaggatgtttccaccattcataaaaattgtaa 184  Q
    |||||||||||||||||||| || | |||||| |||||||| |||| | ||||||||    
T  37971721 tacaagtggacacccatacaaaagaaaggatgattccaccagtcatgataattgtaa 37971665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 3510 - 3462
Alignment:
Q  125 aattacaagtggacacccatacacaaaagaggatgtttccaccattcat 173  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||    
T  3510 aattacaagtggacacccatacacaaaagcgggtgtttccaccaatcat 3462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 19298105 - 19298057
Alignment:
Q  125 aattacaagtggacacccatacacaaaagaggatgtttccaccattcat 173  Q
    ||||||||||| |||||||| |||||||| |||||||||||||| ||||    
T  19298105 aattacaagtgaacacccatgcacaaaagcggatgtttccaccaatcat 19298057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 31419678 - 31419591
Alignment:
Q  109 aaaaaacaacaataataattacaagtggacacccatacacaaaagaggatgtttccaccattcataaaaattgtaattgaacaacacct 197  Q
    ||||||| |||| |||||||||| | ||||||||||||| || || |||||||||||||| || ||| || | ||||| ||| ||||||    
T  31419678 aaaaaaccacaa-aataattacatgcggacacccatacaaaagagcggatgtttccaccaatcgtaataagtataattaaacgacacct 31419591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 268 - 336
Target Start/End: Original strand, 11980900 - 11980968
Alignment:
Q  268 atttttaaagatacaattatttcaatccttccaaagaacccaaacacaggcaagccaaataactttaaa 336  Q
    ||||||||| ||||  ||||||| ||||||||| |||||||||||||| |||  ||||||| |||||||    
T  11980900 atttttaaatatacggttatttcgatccttccatagaacccaaacacaagcataccaaatagctttaaa 11980968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 562 - 638
Target Start/End: Complemental strand, 5539567 - 5539491
Alignment:
Q  562 ttgtcttttgtcggtaatctgttacgaaggaggcgccacgcaaacaaggaaaccttcgaaggaatattcttatgcca 638  Q
    |||||||| || || | |||||| || |||||||||||| ||||||  || ||||| |||||||||| |||||||||    
T  5539567 ttgtctttagtaggaagtctgttgcgtaggaggcgccacacaaacagagacacctttgaaggaatatgcttatgcca 5539491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 32487324 - 32487436
Alignment:
Q  133 gtggacacccatacacaaaagaggatgtttccaccattcataaaaattgtaattgaacaacacctgttttgatttcactcacaggaaggaattgagctta 232  Q
    ||||||||||||||| |  || |||||||| ||||| |||| | || |||| || ||  |||| |||||||||||||  |||| ||| ||||| ||||||    
T  32487324 gtggacacccatacaaatgagcggatgtttgcaccaatcatgataactgtagttaaatgacacatgttttgatttcagccacaagaatgaatttagctta 32487423  T
Q  233 accttctcaatga 245  Q
    || || |||||||    
T  32487424 actttttcaatga 32487436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 577 - 617
Target Start/End: Original strand, 33007995 - 33008035
Alignment:
Q  577 aatctgttacgaaggaggcgccacgcaaacaaggaaacctt 617  Q
    ||||||| |||||||||||||||| |||||||||| |||||    
T  33007995 aatctgtcacgaaggaggcgccacacaaacaaggacacctt 33008035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 562 - 641
Target Start/End: Complemental strand, 23814 - 23735
Alignment:
Q  562 ttgtcttttgtcggtaatctgttacgaaggaggcgccacgcaaacaaggaaaccttcgaaggaatattcttatgccaaac 641  Q
    ||||||||||| || |  ||||| ||||||||||||||| |||| |  |||||||| ||||||||||  |||||||||||    
T  23814 ttgtcttttgtaggaagcctgttgcgaaggaggcgccacacaaatagagaaacctttgaaggaatatgtttatgccaaac 23735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1185 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1185
Description:

Target: scaffold1185; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 648
Target Start/End: Complemental strand, 1768 - 1699
Alignment:
Q  579 tctgttacgaaggaggcgccacgcaaacaaggaaaccttcgaaggaatattcttatgccaaacgtggtca 648  Q
    |||||| ||||||||||| ||| ||||||| || ||||| |||||||||| |||||| || |||| ||||    
T  1768 tctgtttcgaaggaggcgtcacacaaacaaagacacctttgaaggaatatacttatgtcagacgttgtca 1699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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