View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11864_low_12 (Length: 445)

Name: NF11864_low_12
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11864_low_12
NF11864_low_12
[»] chr3 (2 HSPs)
chr3 (107-445)||(14553494-14553834)
chr3 (16-111)||(14553868-14553963)
[»] chr5 (39 HSPs)
chr5 (192-445)||(37533484-37533739)
chr5 (192-445)||(37824279-37824534)
chr5 (192-445)||(37594708-37594963)
chr5 (192-445)||(37400333-37400588)
chr5 (193-445)||(37703052-37703306)
chr5 (192-444)||(37697172-37697426)
chr5 (192-445)||(37640256-37640511)
chr5 (192-445)||(37712008-37712263)
chr5 (212-445)||(37436091-37436326)
chr5 (263-437)||(37392484-37392660)
chr5 (107-182)||(37392322-37392397)
chr5 (16-111)||(37436537-37436632)
chr5 (16-111)||(37640702-37640797)
chr5 (16-111)||(37697617-37697712)
chr5 (16-111)||(37824725-37824820)
chr5 (107-182)||(37436428-37436503)
chr5 (16-111)||(37533930-37534025)
chr5 (16-111)||(37595154-37595249)
chr5 (16-111)||(37703498-37703593)
chr5 (16-111)||(37712454-37712549)
chr5 (107-173)||(37400176-37400242)
chr5 (107-173)||(37640602-37640668)
chr5 (107-181)||(37824617-37824691)
chr5 (107-182)||(37697508-37697583)
chr5 (107-173)||(37703398-37703464)
chr5 (107-173)||(37712354-37712420)
chr5 (16-111)||(37400047-37400142)
chr5 (107-182)||(37533821-37533896)
chr5 (109-164)||(37595063-37595118)
chr5 (16-105)||(37381570-37381659)
chr5 (124-173)||(37412657-37412706)
chr5 (18-108)||(37412513-37412603)
chr5 (124-158)||(37429486-37429520)
chr5 (18-63)||(37392195-37392240)
chr5 (375-432)||(37412962-37413019)
chr5 (397-442)||(37429119-37429164)
chr5 (252-302)||(37429261-37429311)
chr5 (389-438)||(37343272-37343321)
chr5 (192-236)||(37381856-37381900)
[»] chr4 (5 HSPs)
chr4 (192-444)||(16842397-16842651)
chr4 (107-182)||(16842240-16842315)
chr4 (16-111)||(16842111-16842206)
chr4 (389-445)||(24217460-24217516)
chr4 (29-91)||(24216988-24217050)
[»] chr8 (1 HSPs)
chr8 (387-429)||(23496081-23496123)


Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 107 - 445
Target Start/End: Complemental strand, 14553834 - 14553494
Alignment:
Q  107 caatttagatgggatggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataaattaagctggagcatcccagatgtt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14553834 caatttagatgggatggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataacttaagctggagcatcccagatgtt 14553735  T
Q  207 tgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttcttttt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14553734 tgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttcttttt 14553635  T
Q  307 tatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagttataacatgttaaatgg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  14553634 tatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagctatgtggatttaagttataacatgttaaatgg 14553535  T
Q  405 aacaattccacattggtgttattctttgccttcgttgttag 445  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14553534 aacaattccacattggtgttattctttgccttcgttgttag 14553494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 14553963 - 14553868
Alignment:
Q  16 tcaacttccaaaatccaactggagcactcctcaaaggtacttgtacctccattactctactttctcaggtgaaattccttattccataggtcaatt 111  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14553963 tcaacttccaaaatccaactggagtactcctctaaggtacttgtacctccattactctgctttctcaggtgaaattccttattccataggtcaatt 14553868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 192 - 445
Target Start/End: Complemental strand, 37533739 - 37533484
Alignment:
Q  192 agcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctac 291  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||  |||| ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  37533739 agcatcccaaatgtttatggaaatttaatcaaattggaatatttatcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctac 37533640  T
Q  292 ctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagtta 389  Q
    |||| |||||| ||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||| ||| ||| |    
T  37533639 ctcacctttctattttaggtttatcatataacaaactagttgggccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgggtttgagtga 37533540  T
Q  390 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttag 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37533539 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttag 37533484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 192 - 445
Target Start/End: Complemental strand, 37824534 - 37824279
Alignment:
Q  192 agcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctac 291  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||   |||| ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  37824534 agcatcccaaatgtttatggaaatttaatcaaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctac 37824435  T
Q  292 ctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgag--ctgtggatttaagtta 389  Q
    |||| ||||||| ||||| |||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||   |||||||||||| |     
T  37824434 ctcatctttcttatttatatttatcatctaacaaactagttggcccaattccaattgaaatcacaaaacgttcaaaattgagtattgtggatttaagctt 37824335  T
Q  390 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttag 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37824334 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttag 37824279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 192 - 445
Target Start/End: Complemental strand, 37594963 - 37594708
Alignment:
Q  192 agcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctac 291  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||   |||| || |||||||||| |||||||||||||||||||||||||| ||||||    
T  37594963 agcatcccaattgtttatggaaatttaatcaaattggaatatttagcactttcctttaacaacctaacaggccaagttccatcatcactttttcatctac 37594864  T
Q  292 ctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagtta 389  Q
    |||| |||||| ||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||| ||| ||  |    
T  37594863 ctcacctttctattttaggtttatcatataacaaactagttgggccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgggtttgaggga 37594764  T
Q  390 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttag 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37594763 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttag 37594708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 192 - 445
Target Start/End: Original strand, 37400333 - 37400588
Alignment:
Q  192 agcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctac 291  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||   |||| ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  37400333 agcatcccaattgtttatggaaatttaatcaaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctac 37400432  T
Q  292 ctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagct--gtggatttaagtta 389  Q
    |||| ||||||  ||||| |||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||  |||  |||  || |    
T  37400433 ctcatctttctcatttatatttatcatctaacaaactagttggcccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgtttttgggtga 37400532  T
Q  390 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttag 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37400533 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttag 37400588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 193 - 445
Target Start/End: Complemental strand, 37703306 - 37703052
Alignment:
Q  193 gcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacc 292  Q
    ||||||||  ||||| ||||||||||| |||||||||||||||||  |||| ||||||||| ||| |||||||||||||||||||||||||| |||||||    
T  37703306 gcatcccaattgtttatggaaatttaaacaaattggaatatttatcactttcctctaacaagctaacaggccaagttccatcatcactttttcatctacc 37703207  T
Q  293 tcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagttat 390  Q
    ||| |||| | ||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||| ||| ||  ||    
T  37703206 tcacctttttattttaggtttatcatttaacaaactagttgggccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgggtttgagggat 37703107  T
Q  391 aacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttag 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37703106 aacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttag 37703052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 192 - 444
Target Start/End: Complemental strand, 37697426 - 37697172
Alignment:
Q  192 agcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctac 291  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||   |||| ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  37697426 agcatcccaattgtttatggaaatttaatcaaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctac 37697327  T
Q  292 ctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgag--ctgtggatttaagtta 389  Q
    | || ||||||  |||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| ||||||||   ||||  |||   | |    
T  37697326 cccacctttctcatttaggtttatcatttaacaaactagttgggccaattccaattgaaatcacaaaacgttccaaattgagttatgtgtttttggatga 37697227  T
Q  390 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgtta 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37697226 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgtta 37697172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 192 - 445
Target Start/End: Complemental strand, 37640511 - 37640256
Alignment:
Q  192 agcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctac 291  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||  |||| || |||||||||| |||||||||||||||||||||||||| ||||||    
T  37640511 agcatcccaattgtttatggaaatttaatcaaattggaatatttatcactttactttaacaacctaacaggccaagttccatcatcactttttcatctac 37640412  T
Q  292 ctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgag--ctgtggatttaagtta 389  Q
    |||| ||||||  ||||| |||| ||| ||||||||||||||| || ||| ||||||||||| |||||||||| ||||||||   ||||| |||   | |    
T  37640411 ctcatctttctcatttatatttagcatataacaaactagttggcccaattccaattgaaatcgcaaaacgttccaaattgagatatgtgggtttggatga 37640312  T
Q  390 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttag 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37640311 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttag 37640256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 192 - 445
Target Start/End: Complemental strand, 37712263 - 37712008
Alignment:
Q  192 agcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctac 291  Q
    ||||||||| |||||| ||||||||||||||||||| ||||||||   |||| ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  37712263 agcatcccaaatgtttatggaaatttaatcaaattgaaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctac 37712164  T
Q  292 ctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagtta 389  Q
    |||| ||||||  ||||| |||| ||  ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||  ||||  |||   | |    
T  37712163 ctcatctttctcatttatatttagcagataacaaactagttggcccaattccaattgaaatcacaaaacgttcaaaattgagctatgtgtttttggatga 37712064  T
Q  390 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttag 445  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  37712063 taacatgttaaatggaacaattccacagtggtgttattctttgccttcattgttag 37712008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 212 - 445
Target Start/End: Complemental strand, 37436326 - 37436091
Alignment:
Q  212 aaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctacctcagctttcttttttatgt 311  Q
    |||||||| |||||||||||||||||  |||| ||| |||| |||| |||||||||||||||||||||||||| ||||||| || ||||||  ||||  |    
T  37436326 aaatttaaccaaattggaatatttatcactttcctccaacagcctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttagat 37436227  T
Q  312 ttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagttataacatgttaaatggaacaa 409  Q
    ||||||| ||||||||||||||| || ||| |||||||||| |||||||||| ||||||||||  ||||| | ||   ||||||||||||||||||||||    
T  37436226 ttatcatttaacaaactagttggcccaattccaattgaaattacaaaacgtttaaaattgagctatgtgggtctagaatataacatgttaaatggaacaa 37436127  T
Q  410 ttccacattggtgttattctttgccttcgttgttag 445  Q
    ||||||| |||||||||| ||||||||| |||||||    
T  37436126 ttccacagtggtgttattatttgccttcattgttag 37436091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 263 - 437
Target Start/End: Original strand, 37392484 - 37392660
Alignment:
Q  263 ccaagttccatcatcactttttaatctacctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgt 362  Q
    |||||||||||||||||||||| |||||||  | ||||||||||||  |||||||||||||||||||||||| || ||| || || |||||||||||||     
T  37392484 ccaagttccatcatcactttttcatctacccaacctttcttttttagatttatcatctaacaaactagttggcccaattccagttcaaatcacaaaacgc 37392583  T
Q  363 tcaaaattgagc--tgtggatttaagttataacatgttaaatggaacaattccacattggtgttattctttgccttc 437  Q
    ||||||||||||  |||| ||||| ||| ||||||||| ||||| |||||||| || ||||||||||||||||||||    
T  37392584 tcaaaattgagcattgtgaatttaggttctaacatgtttaatggtacaattccgcagtggtgttattctttgccttc 37392660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 37392322 - 37392397
Alignment:
Q  107 caatttagatgggatggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37392322 caatttagatgggatggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataaa 37392397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 37436632 - 37436537
Alignment:
Q  16 tcaacttccaaaatccaactggagcactcctcaaaggtacttgtacctccattactctactttctcaggtgaaattccttattccataggtcaatt 111  Q
    |||||||||||| ||||||||||||||||||| |||||||||| |||||| ||  ||| |||||||||||||||||||||||||||||||||||||    
T  37436632 tcaacttccaaagtccaactggagcactcctctaaggtacttgaacctccgtttatctgctttctcaggtgaaattccttattccataggtcaatt 37436537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 37640797 - 37640702
Alignment:
Q  16 tcaacttccaaaatccaactggagcactcctcaaaggtacttgtacctccattactctactttctcaggtgaaattccttattccataggtcaatt 111  Q
    |||||||||||| ||||||||||||||||||| |||||||||| |||||| ||  ||| |||||||||||||||||||||||||||||||||||||    
T  37640797 tcaacttccaaagtccaactggagcactcctctaaggtacttgaacctccgtttatctgctttctcaggtgaaattccttattccataggtcaatt 37640702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 37697712 - 37697617
Alignment:
Q  16 tcaacttccaaaatccaactggagcactcctcaaaggtacttgtacctccattactctactttctcaggtgaaattccttattccataggtcaatt 111  Q
    |||||||||||| ||||||||||||||||||| |||||||||  |||||  |||| || |||||||||||||||||||||||||||||||||||||    
T  37697712 tcaacttccaaagtccaactggagcactcctctaaggtacttagacctctcttacactgctttctcaggtgaaattccttattccataggtcaatt 37697617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 37824820 - 37824725
Alignment:
Q  16 tcaacttccaaaatccaactggagcactcctcaaaggtacttgtacctccattactctactttctcaggtgaaattccttattccataggtcaatt 111  Q
    |||||||||||| ||||||||||||||||||| |||||||||| |||||  || |||| |||| ||||||||||||||||||||||||||||||||    
T  37824820 tcaacttccaaagtccaactggagcactcctctaaggtacttggacctctcttcctctgctttttcaggtgaaattccttattccataggtcaatt 37824725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 37436503 - 37436428
Alignment:
Q  107 caatttagatgggatggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataaa 182  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  37436503 caattttgatgggatggttcctctatctttgtggaacctcactcaactaacatatttggacctttcaagaaataaa 37436428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 37534025 - 37533930
Alignment:
Q  16 tcaacttccaaaatccaactggagcactcctcaaaggtacttgtacctccattactctactttctcaggtgaaattccttattccataggtcaatt 111  Q
    |||||||||||| ||||||||||||||||||| ||||||||||  ||||  || |||| |||| ||||||||||||||||||||||||||||||||    
T  37534025 tcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctctttctctgctttttcaggtgaaattccttattccataggtcaatt 37533930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 37595249 - 37595154
Alignment:
Q  16 tcaacttccaaaatccaactggagcactcctcaaaggtacttgtacctccattactctactttctcaggtgaaattccttattccataggtcaatt 111  Q
    |||||||||||| ||||||| ||||||||||| |||||||||| |||||| ||  ||| |||| ||||||||||||||||||||||||||||||||    
T  37595249 tcaacttccaaagtccaacttgagcactcctctaaggtacttgaacctccgtttatctgctttttcaggtgaaattccttattccataggtcaatt 37595154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 37703593 - 37703498
Alignment:
Q  16 tcaacttccaaaatccaactggagcactcctcaaaggtacttgtacctccattactctactttctcaggtgaaattccttattccataggtcaatt 111  Q
    ||||||||||||||||||||||||| |||||| ||| |||||| |||||  || |||| |||| ||||||||||||||||||||||||||||||||    
T  37703593 tcaacttccaaaatccaactggagctctcctctaagatacttgaacctctcttcctctgctttttcaggtgaaattccttattccataggtcaatt 37703498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 37712549 - 37712454
Alignment:
Q  16 tcaacttccaaaatccaactggagcactcctcaaaggtacttgtacctccattactctactttctcaggtgaaattccttattccataggtcaatt 111  Q
    |||||||||||| ||||||||||||||||||| ||||||||||  ||||  || |||| |||| ||||||||||||||||||||||||||||||||    
T  37712549 tcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctcttcctctgctttttcaggtgaaattccttattccataggtcaatt 37712454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 37400176 - 37400242
Alignment:
Q  107 caatttagatgggatggttcctctatctttgtggaacctcactcaactaacacatttggacctttca 173  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  37400176 caatttagatgggatggttcctctatctttgtggaacctcacccaactaacatatttggacctttca 37400242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 37640668 - 37640602
Alignment:
Q  107 caatttagatgggatggttcctctatctttgtggaacctcactcaactaacacatttggacctttca 173  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  37640668 caatttagatgggatggttcctctatctttgtggaacctcacccaactaacatatttggacctttca 37640602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 37824691 - 37824617
Alignment:
Q  107 caatttagatgggatggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataa 181  Q
    |||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  37824691 caattttgatgggattgttcctctatctttgtggaacctcacccaactaacatatttggacctttcacaaaataa 37824617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 37697583 - 37697508
Alignment:
Q  107 caatttagatgggatggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataaa 182  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | ||||||    
T  37697583 caattttgatgggatggttcctctatctttgtggaacctcactcaactaacatatttggatctttcaaataataaa 37697508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 37703464 - 37703398
Alignment:
Q  107 caatttagatgggatggttcctctatctttgtggaacctcactcaactaacacatttggacctttca 173  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  37703464 caatttagatgggatggttcctctatctttgtggaatctcacccaactaacatatttggacctttca 37703398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 37712420 - 37712354
Alignment:
Q  107 caatttagatgggatggttcctctatctttgtggaacctcactcaactaacacatttggacctttca 173  Q
    |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  37712420 caattttgatgggatggttcctctatctttgtggaatctcacccaactaacacatttggacctttca 37712354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 37400047 - 37400142
Alignment:
Q  16 tcaacttccaaaatccaactggagcactcctcaaaggtacttgtacctccattactctactttctcaggtgaaattccttattccataggtcaatt 111  Q
    |||||||||||| ||||||||||||||||||| ||||||||||  ||||  || |||| |||| |||||||||||||| ||||||||||| |||||    
T  37400047 tcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctcttcctctgctttttcaggtgaaattccctattccataggccaatt 37400142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 37533896 - 37533821
Alignment:
Q  107 caatttagatgggatggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataaa 182  Q
    |||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||    
T  37533896 caattttgatggaatggttcctctatctttgtggaacctcacccaactaacatatttggatctttcacataataaa 37533821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 37595118 - 37595063
Alignment:
Q  109 atttagatgggatggttcctctatctttgtggaacctcactcaactaacacatttg 164  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  37595118 atttagatgggatggttcctctatctttgtggaacctcacccaactaacatatttg 37595063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 37381570 - 37381659
Alignment:
Q  16 tcaacttccaaaatccaactggagcactcctcaaaggtacttgtacctccattactctactttctcaggtgaaattccttattccatagg 105  Q
    ||||||||| |||||||||||||||||||||   ||||||||| |||||  |  | |  |||||||||||||||||||||||||||||||    
T  37381570 tcaacttccgaaatccaactggagcactcctttgaggtacttggacctctctcgcacccctttctcaggtgaaattccttattccatagg 37381659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 37412657 - 37412706
Alignment:
Q  124 ttcctctatctttgtggaacctcactcaactaacacatttggacctttca 173  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  37412657 ttcctcaatctttatggaacctcactcaactaacacatttggacctttca 37412706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 37412513 - 37412603
Alignment:
Q  18 aacttccaaaatccaactggagcactcctcaaaggtacttgtacctccattactctactttctcaggtgaaattccttattccataggtca 108  Q
    |||||||||  | ||||||||||||||||| |||||||||| | |||  ||   ||  |||||||||||||||||||||||||||||||||    
T  37412513 aacttccaatgttcaactggagcactcctctaaggtacttggatctctctttaacttttttctcaggtgaaattccttattccataggtca 37412603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 37429520 - 37429486
Alignment:
Q  124 ttcctctatctttgtggaacctcactcaactaaca 158  Q
    |||||||||||||||||||||||||||||||||||    
T  37429520 ttcctctatctttgtggaacctcactcaactaaca 37429486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 37392195 - 37392240
Alignment:
Q  18 aacttccaaaatccaactggagcactcctcaaaggtacttgtacct 63  Q
    ||||||||||||| |||||||||||||||| |||||||||| ||||    
T  37392195 aacttccaaaatcaaactggagcactcctctaaggtacttggacct 37392240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 375 - 432
Target Start/End: Original strand, 37412962 - 37413019
Alignment:
Q  375 tgtggatttaagttataacatgttaaatggaacaattccacattggtgttattctttg 432  Q
    ||||||||||| | |||| |||||||||||||||| ||| ||||||||||||| ||||    
T  37412962 tgtggatttaaataataaaatgttaaatggaacaaatcctcattggtgttattatttg 37413019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 397 - 442
Target Start/End: Complemental strand, 37429164 - 37429119
Alignment:
Q  397 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 442  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37429164 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 37429119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 37429311 - 37429261
Alignment:
Q  252 aacctagcaggccaagttccatcatcactttttaatctacctcagctttct 302  Q
    |||||| |||||||||||||||||||| | ||| ||||| |||||||||||    
T  37429311 aacctaacaggccaagttccatcatcattgtttcatctaactcagctttct 37429261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 37343321 - 37343272
Alignment:
Q  389 ataacatgttaaatggaacaattccacattggtgttattctttgccttcg 438  Q
    |||||||||||||||||| ||||| | ||||||||| | |||||||||||    
T  37343321 ataacatgttaaatggaaaaattctaaattggtgttttactttgccttcg 37343272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 37381856 - 37381900
Alignment:
Q  192 agcatcccagatgtttgtggaaatttaatcaaattggaatattta 236  Q
    ||||||||| |||||| || ||||||||||||||| |||||||||    
T  37381856 agcatcccaaatgtttttgaaaatttaatcaaattagaatattta 37381900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 192 - 444
Target Start/End: Original strand, 16842397 - 16842651
Alignment:
Q  192 agcatcccagatgtttgtggaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccatcatcactttttaatctac 291  Q
    |||||||||  ||||| ||||||||||| |||||| |||||| |||  |||| ||||||||  ||| |||||||||||||||||||||||||| ||||||    
T  16842397 agcatcccaattgtttatggaaatttaagcaaattagaatatctatcactttcctctaacagtctaacaggccaagttccatcatcactttttcatctac 16842496  T
Q  292 ctcagctttcttttttatgtttatcatctaacaaactagttgggccgattgcaattgaaatcacaaaacgttcaaaattgagc--tgtggatttaagtta 389  Q
    || | ||||||  ||||| |||||||| ||||||||| ||||| || ||| |||||||||||||||||  |||||||||||||  ||||| ||| ||| |    
T  16842497 cttatctttctaatttatatttatcatttaacaaactggttggcccaattccaattgaaatcacaaaaacttcaaaattgagctatgtgggtttgagtga 16842596  T
Q  390 taacatgttaaatggaacaattccacattggtgttattctttgccttcgttgtta 444  Q
     |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16842597 gaacatgttaaatggaacaattccaaattggtgttattctttgccttcgttgtta 16842651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 16842240 - 16842315
Alignment:
Q  107 caatttagatgggatggttcctctatctttgtggaacctcactcaactaacacatttggacctttcacaaaataaa 182  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | ||||||    
T  16842240 caattttgatgggatggttcctctatctttgtggaacctcactcaactaacatatttggatctttcaaataataaa 16842315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 16842111 - 16842206
Alignment:
Q  16 tcaacttccaaaatccaactggagcactcctcaaaggtacttgtacctccattactctactttctcaggtgaaattccttattccataggtcaatt 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||  | |  || |||||||||| |||||  | |||||||||||||||||    
T  16842111 tcaacttccaaaatccaactggagcactcctctaaggtacttgtacctctctcatactgctttctcaggagaaatctcctattccataggtcaatt 16842206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 389 - 445
Target Start/End: Original strand, 24217460 - 24217516
Alignment:
Q  389 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttag 445  Q
    ||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  24217460 ataacatgttaaatggaacaattccgcaatggtgttattccttgccttcgttgttag 24217516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 24216988 - 24217050
Alignment:
Q  29 tccaactggagcactcctcaaaggtacttgtacctccattactctactttctcaggtgaaatt 91  Q
    ||||||||||||||||| | |||||||||| |||||  || ||||  ||||||||||||||||    
T  24216988 tccaactggagcactcccctaaggtacttggacctctctttctctggtttctcaggtgaaatt 24217050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 429
Target Start/End: Complemental strand, 23496123 - 23496081
Alignment:
Q  387 ttataacatgttaaatggaacaattccacattggtgttattct 429  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  23496123 ttataacatgttaaatggaacaattccacgttggtgtttttct 23496081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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