View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11864_low_13 (Length: 422)
Name: NF11864_low_13
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11864_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 12 - 405
Target Start/End: Complemental strand, 48054136 - 48053742
Alignment:
| Q |
12 |
gagatgaataaatgcattagacagatcaaactatgcatcagaaaccaccttgattgatactgcagttagatttctgtctgtgcttctgtttcttggggca |
111 |
Q |
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| T |
48054136 |
gagatgaataaatgcattagacagatcaaactatgcatcagaaaccaccttgattgatactgcagttagatttccgtctatgcttctgtttcttggggca |
48054037 |
T |
|
| Q |
112 |
ggggtaatttctaggccttaactatcaagcctgtcaaatatttctgtattttcttgttattgtcatacttactgaaattggagcttcagtcaaagccagg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
48054036 |
ggggtaatttctaggccttaactatcaagcctgtcaaatatttctgtattttcttgttattgtcatacttactgaaattggagcttcagtcaaagccaag |
48053937 |
T |
|
| Q |
212 |
aagtttatgttttgaactcttcctttaaattttgataaaggaatgaaactctgatgttagttgcaataacctcattgtattttatgcaatggatctctaa |
311 |
Q |
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| T |
48053936 |
aagtttacgttttgaactcttcctttaaattttgataaaggaatgaaactctgatgttagttgcaataacctcactgtattttatgcaatggatctctaa |
48053837 |
T |
|
| Q |
312 |
ttttctcacagtaaaaaattgaattcatcg-agacaatgaaaagatacaaaggatattgttctgatatttcataagtgggaagtcctacattttg |
405 |
Q |
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| T |
48053836 |
ttttctcacagtaaaaaattgaattcatcgaagacaatgaaaagatacaaaggatattgttctgatatttcataagtgggaagtcctacattttg |
48053742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 160 - 353
Target Start/End: Complemental strand, 48052727 - 48052532
Alignment:
| Q |
160 |
ttttcttgttattgtcatacttactgaaattggagcttcagtcaaagccaggaagtttatgttttgaactcttcctttaaattttgat-aaaggaatgaa |
258 |
Q |
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| T |
48052727 |
ttttcttgttattgtcatatctactgaaattggggattctgtcaaggccaagaagttgaattttttaacctttccctttaatttcaataaaaggaatgaa |
48052628 |
T |
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| Q |
259 |
actctgatgttagttgcaataacctcattgtattttatgcaatggatctctaattttctcacagtaaaaaattgaattcatc-gagacaatgaaaa |
353 |
Q |
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| T |
48052627 |
actcaactgttaactgcaataacctcactgtattttatgcattggatcgcttcttttcctacagttaaaaattgaattcatcaaagacaatgaaaa |
48052532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 80 - 333
Target Start/End: Original strand, 29814061 - 29814322
Alignment:
| Q |
80 |
gatttctgtctgtgcttctgtttcttggggcaggggtaatttctaggccttaactatcaagcctgtcaaatatttctgtattttcttgttattgtcatac |
179 |
Q |
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| T |
29814061 |
gatttctgtctatgctcccattttctggggcaggggtaatttctaggctttaaccatcgtgcttcacgaatttttctgcattttcttgttattgtcatat |
29814160 |
T |
|
| Q |
180 |
ttactgaaattggagcttcagtcaaagccaggaag-tttatgt------tttgaactcttcctttaaattttgat-aaaggaatgaaactctgatgttag |
271 |
Q |
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||| |||||| | ||||| |||||||||| |||| ||| ||| |||||||| |||| || ||||||||| ||||||| || ||| | |||||| |
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| T |
29814161 |
ttattgaaatcagggcttctgtcaaagccaagaagttttctgtttgaaatttgaacttttccctttaattttgataaaaggaaggagtctcagctgttag |
29814260 |
T |
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| Q |
272 |
ttgcaataacctcattgtattttatgcaatggatctctaattttctcacagtaaaaaattga |
333 |
Q |
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| T |
29814261 |
ctgaaataacctcaatgtattttacgcattggatctcttctttccttacagtaaaaatttga |
29814322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 353
Target Start/End: Complemental strand, 48039691 - 48039558
Alignment:
| Q |
221 |
ttttgaactcttcctttaaattttgataaaggaatgaaactctgatgttagttgcaataacctcattgtattttatgcaatggatctctaattttctcac |
320 |
Q |
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|||||||| |||| || ||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||||||| ||||| ||| ||||| || |
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| T |
48039691 |
ttttgaacctttccctttaatttcgataaaggaatgaaactcaactgttaactgcaataacctcactgtattttatgcattggatatcttcttttcctac |
48039592 |
T |
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| Q |
321 |
agtaaaaaattgaattcatc-gagacaatgaaaa |
353 |
Q |
| |
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||| || ||||||||||||| |||||||||||| |
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| T |
48039591 |
agttaacaattgaattcatcaaagacaatgaaaa |
48039558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 353
Target Start/End: Complemental strand, 48034275 - 48034160
Alignment:
| Q |
239 |
aattttgataaa-ggaatgaaactctgatgttagttgcaataacctcattgtattttatg-caatggatctctaattttctcacagtaaaaaattgaatt |
336 |
Q |
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|||||||||||| |||| |||||| |||||||| ||||||||||||| || ||||||| || ||||||||| ||||| ||||||||||| |||||| |
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| T |
48034275 |
aattttgataaaaggaagaaaactcagatgttagctgcaataacctca--gttttttatgacattggatctctttgtttcttacagtaaaaaactgaatt |
48034178 |
T |
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| Q |
337 |
catc-gagacaatgaaaa |
353 |
Q |
| |
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|||| |||||||||||| |
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| T |
48034177 |
catcaaagacaatgaaaa |
48034160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 48052797 - 48052740
Alignment:
| Q |
80 |
gatttctgtctgtgcttctgtttcttggggcaggggtaatttctaggccttaactatc |
137 |
Q |
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|||||||| || |||||| ||||||||||||||| |||| ||||||||||||| ||| |
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| T |
48052797 |
gatttctggctatgcttccatttcttggggcagggataatatctaggccttaaccatc |
48052740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 29813959 - 29814007
Alignment:
| Q |
11 |
tgagatgaataaatgcattagacagatcaaactatgcatcagaaaccac |
59 |
Q |
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| T |
29813959 |
tgagataaataaatgcaataggaaaatcaaactatgcatcagaaaccac |
29814007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 1173338 - 1173288
Alignment:
| Q |
9 |
aatgagatgaataaatgcattagacagatcaaactatgcatcagaaaccac |
59 |
Q |
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| T |
1173338 |
aatgaaataaataaatgcattaggcaaatcaaactatacatcagaaaccac |
1173288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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