View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11864_low_16 (Length: 351)
Name: NF11864_low_16
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11864_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 5948434 - 5948749
Alignment:
| Q |
18 |
ttttcaacaaaagtgaccagtaaaaaggaagatgagatattaacttcaaatcgaatagttatgcacactcaaaaaatgaatattcttgttcaatatattt |
117 |
Q |
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| T |
5948434 |
ttttcaacaaaagtgacaagtaaaaaggaagatgagatattaacttcaaatcgaatagttatgcacactcaaaaaatgaatattcttgttcaatatattt |
5948533 |
T |
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| Q |
118 |
gactaaagggtgaccagtttggaatcctatcctgaaatttaaaagcaaaagagattagttaaaggaaggaatatatctattttatttcnnnnnnngactg |
217 |
Q |
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| T |
5948534 |
gactaaagggtgaccagtttggaatcctatcctgaaatttaaaagcaaaagagattagttaaaggagggaatatatctattttatttcaaaaaaagactt |
5948633 |
T |
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| Q |
218 |
attctcattcactcacttcttctatttaacccctttcttcaatatgacactttgaaaatcataggcaacttgataaaacttaggagatcatcaactctta |
317 |
Q |
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| T |
5948634 |
attctcattcactcacttcttctatttaacccctttcttcaatatgacactttgaaaatcataggcaacttgataaaacttaggagatcatcaactctta |
5948733 |
T |
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| Q |
318 |
acatttcaaaatgcct |
333 |
Q |
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| T |
5948734 |
acatttcaaaatgcct |
5948749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 5954168 - 5954228
Alignment:
| Q |
97 |
atattcttgttcaatat--atttgactaaagggtgaccagtttggaatcctatcctgaaat |
155 |
Q |
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| T |
5954168 |
atattcttgttcaatatatatttgactaaagggtgaccagtttggaatcctatcctaaaat |
5954228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 5954337 - 5954396
Alignment:
| Q |
274 |
aatcataggcaacttgataaaacttaggagatcatcaactcttaacatttcaaaatgcct |
333 |
Q |
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|||||||| |||||||||| || ||| ||||||||||||||||||||||||||||||||| |
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| T |
5954337 |
aatcatagacaacttgatagaaattaagagatcatcaactcttaacatttcaaaatgcct |
5954396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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