View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11864_low_17 (Length: 333)

Name: NF11864_low_17
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11864_low_17
NF11864_low_17
[»] scaffold0879 (5 HSPs)
scaffold0879 (250-333)||(4428-4511)
scaffold0879 (259-329)||(4773-4843)
scaffold0879 (250-326)||(4524-4600)
scaffold0879 (250-326)||(4572-4648)
scaffold0879 (253-326)||(4719-4792)
[»] chr4 (20 HSPs)
chr4 (250-333)||(24421263-24421346)
chr4 (250-333)||(24470377-24470460)
chr4 (250-333)||(24470569-24470652)
chr4 (17-103)||(24482249-24482335)
chr4 (250-333)||(24477400-24477483)
chr4 (253-326)||(24477503-24477576)
chr4 (250-326)||(24477647-24477723)
chr4 (259-329)||(24420931-24421001)
chr4 (280-333)||(24420591-24420644)
chr4 (279-320)||(24482206-24482247)
chr4 (19-68)||(24482437-24482486)
chr4 (253-333)||(24420687-24420767)
chr4 (250-326)||(24421126-24421202)
chr4 (250-329)||(24470713-24470792)
chr4 (262-329)||(24477086-24477153)
chr4 (253-326)||(24420982-24421055)
chr4 (253-326)||(24470668-24470741)
chr4 (304-333)||(24481530-24481559)
chr4 (250-326)||(24421174-24421250)
chr4 (257-333)||(24470863-24470939)
[»] chr2 (5 HSPs)
chr2 (250-333)||(41900288-41900371)
chr2 (250-326)||(41899959-41900035)
chr2 (250-332)||(41900097-41900179)
chr2 (250-333)||(41900480-41900563)
chr2 (280-332)||(41900529-41900581)


Alignment Details
Target: scaffold0879 (Bit Score: 84; Significance: 7e-40; HSPs: 5)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 250 - 333
Target Start/End: Original strand, 4428 - 4511
Alignment:
Q  250 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4428 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 4511  T

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Target: scaffold0879; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 4773 - 4843
Alignment:
Q  259 ccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcc 329  Q
    |||||||||||||| |||   ||||| ||||| || ||||| ||||||||||||||||||||||| |||||    
T  4773 ccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtctacaaatctcc 4843  T

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Target: scaffold0879; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 4524 - 4600
Alignment:
Q  250 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtc 326  Q
    |||||||||||||||||||| || |||   |||||||| || || || ||||| || ||||||||||||||||||||    
T  4524 tcacctcccccaccatatgtttacaagtcaccaccacctccatccccttcacctcctcctccatatgtctacaagtc 4600  T

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Target: scaffold0879; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 4572 - 4648
Alignment:
Q  250 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtc 326  Q
    |||||||| || ||||||||||| |||   ||||||||||| || ||||| ||||||||||||||| | ||||||||    
T  4572 tcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtc 4648  T

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Target: scaffold0879; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 4719 - 4792
Alignment:
Q  253 cctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtc 326  Q
    ||||||||||||||||| |||||    |||||||| || |||||||| || || || |||||||||||||||||    
T  4719 cctcccccaccatatgtatataaatcaccaccacccccatctccatccccccctccaccatatgtctacaagtc 4792  T

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Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 24421346 - 24421263
Alignment:
Q  250 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24421346 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 24421263  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 250 - 333
Target Start/End: Original strand, 24470377 - 24470460
Alignment:
Q  250 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24470377 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 24470460  T

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Target: chr4; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 250 - 333
Target Start/End: Original strand, 24470569 - 24470652
Alignment:
Q  250 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24470569 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 24470652  T

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Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 24482335 - 24482249
Alignment:
Q  17 agttccctccatataattactataaaccgccacccccatcaccgccacctccttacgattacaaattaccaccatattactacaaat 103  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24482335 agttccctccatataattactataaacctccacccccgtcaccgccacctccttatgattacaaattaccaccatattactacaaat 24482249  T

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Target: chr4; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 24477483 - 24477400
Alignment:
Q  250 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 333  Q
    ||||||||||||||||||||||| |||||||| || | ||| ||||||||||||||||||||||||||||||||||||||||||    
T  24477483 tcacctcccccaccatatgtctacaagagtcctcctctaccttctccatcaccaccacctccatatgtctacaagtctcctcct 24477400  T

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Target: chr4; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 24477576 - 24477503
Alignment:
Q  253 cctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtc 326  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  24477576 cctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtc 24477503  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 326
Target Start/End: Complemental strand, 24477723 - 24477647
Alignment:
Q  250 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtc 326  Q
    ||||| || ||||| ||||||||||||  ||| |||||||| ||||| |||||||| ||||||||||| ||||||||    
T  24477723 tcaccaccaccaccttatgtctataagtctcctccaccaccatctccctcaccacctcctccatatgtgtacaagtc 24477647  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 24421001 - 24420931
Alignment:
Q  259 ccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcc 329  Q
    |||||||||||||| |||   ||||| ||||| || ||||| ||||||||||||||||||||||| |||||    
T  24421001 ccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtctacaaatctcc 24420931  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 24420644 - 24420591
Alignment:
Q  280 ccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 333  Q
    ||||||||||| || || ||||||||||||||||||||||| ||||| ||||||    
T  24420644 ccaccaccaccatccccttcaccaccacctccatatgtctataagtcccctcct 24420591  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 24482247 - 24482206
Alignment:
Q  279 tccaccaccaccctctccatcaccaccacctccatatgtcta 320  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  24482247 tccaccaccaccatctccatcaccaccacctccttatgtcta 24482206  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 24482486 - 24482437
Alignment:
Q  19 ttccctccatataattactataaaccgccacccccatcaccgccacctcc 68  Q
    |||||||||||||||||||||||| | ||||| |||||||| ||||||||    
T  24482486 ttccctccatataattactataaatctccaccaccatcaccaccacctcc 24482437  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 24420767 - 24420687
Alignment:
Q  253 cctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 333  Q
    ||||||||||||||||| || |||   ||||| ||||| |||||||| |||||||||||||| || || || |||||||||    
T  24420767 cctcccccaccatatgtttacaagtcaccacctccaccgtctccatccccaccacctccatacgtttataaatctcctcct 24420687  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 326
Target Start/End: Complemental strand, 24421202 - 24421126
Alignment:
Q  250 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtc 326  Q
    |||||||| || ||||||||||| |||   ||||||||||| || ||||| ||||||||||||||| | ||||||||    
T  24421202 tcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtc 24421126  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 329
Target Start/End: Original strand, 24470713 - 24470792
Alignment:
Q  250 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcc 329  Q
    |||||||| || ||||||||||| |||   ||||| ||||| || ||||| |||||||| |||||||||||||| |||||    
T  24470713 tcacctcctcctccatatgtctacaagtcaccacctccaccatccccatctccaccaccaccatatgtctacaaatctcc 24470792  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 329
Target Start/End: Complemental strand, 24477153 - 24477086
Alignment:
Q  262 ccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcc 329  Q
    |||||||||||||||   ||||| || || |||||||| ||||||||||||||||| ||||| |||||    
T  24477153 ccatatgtctataaggcaccacctcctccatctccatccccaccacctccatatgtttacaaatctcc 24477086  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 24421055 - 24420982
Alignment:
Q  253 cctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtc 326  Q
    ||||||||||||||||| |||||    |||||||| || |||||||| || || || |||||||||||||||||    
T  24421055 cctcccccaccatatgtatataaatcaccaccacccccatctccatccccccctccaccatatgtctacaagtc 24420982  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 24470668 - 24470741
Alignment:
Q  253 cctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtc 326  Q
    ||||||||||| ||| | ||||||   |||||||| || ||||| ||||| || ||||||||||||||||||||    
T  24470668 cctcccccaccctatatttataagtcgccaccacctccatctccttcacctcctcctccatatgtctacaagtc 24470741  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Complemental strand, 24481559 - 24481530
Alignment:
Q  304 ccacctccatatgtctacaagtctcctcct 333  Q
    ||||||||||||||||||||||||||||||    
T  24481559 ccacctccatatgtctacaagtctcctcct 24481530  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 326
Target Start/End: Complemental strand, 24421250 - 24421174
Alignment:
Q  250 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtc 326  Q
    |||||||||||||| ||||| || |||   |||||||| || || || ||||| || ||||||||||||||||||||    
T  24421250 tcacctcccccaccttatgtttacaagtcaccaccacctccatccccttcacctcctcctccatatgtctacaagtc 24421174  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 24470863 - 24470939
Alignment:
Q  257 ccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 333  Q
    ||||||||||||| || |||   ||||| ||||| |||||||| |||||||||||||| || || ||||| ||||||    
T  24470863 ccccaccatatgtttacaagtcaccacctccaccgtctccatccccaccacctccatacgtttataagtcacctcct 24470939  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 41900371 - 41900288
Alignment:
Q  250 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 333  Q
    |||| ||| |||||||||||||| ||   ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  41900371 tcacttcctccaccatatgtctacaaatctcctccacctccctctccttcaccaccacctccatatgtctacaagtctcctcct 41900288  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 326
Target Start/End: Complemental strand, 41900035 - 41899959
Alignment:
Q  250 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtc 326  Q
    |||||||| |||||||||||||| |||   ||||||||||| || || |||||||| ||||||||||| ||||||||    
T  41900035 tcacctccaccaccatatgtctacaagtccccaccaccaccttccccctcaccacctcctccatatgtttacaagtc 41899959  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 41900179 - 41900097
Alignment:
Q  250 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcc 332  Q
    |||||||| ||||| |||||||| ||   ||| ||||| |||||||| |||||||| ||||||||||| ||||| ||||||||    
T  41900179 tcacctcctccaccgtatgtctacaaatctcctccacctccctctccttcaccaccgcctccatatgtttacaaatctcctcc 41900097  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 41900563 - 41900480
Alignment:
Q  250 tcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcct 333  Q
    |||||||| || ||||||||||| ||   ||| ||||| |||||||||||||||| ||||   |||||||| ||||||||||||    
T  41900563 tcacctcctccgccatatgtctacaaatctcctccacctccctctccatcaccacaacctaagtatgtctataagtctcctcct 41900480  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 41900581 - 41900529
Alignment:
Q  280 ccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcc 332  Q
    |||||||| |||||||| ||||| || || |||||||||||||| ||||||||    
T  41900581 ccaccacctccctctccttcacctcctccgccatatgtctacaaatctcctcc 41900529  T

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