View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11864_low_21 (Length: 268)
Name: NF11864_low_21
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11864_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 38645591 - 38645838
Alignment:
| Q |
16 |
aaattatgaatatgtaactaaacaattatatttgtacattcttatttttcacatactcattcaacacatcatcttttctttatctctctttctatcgcat |
115 |
Q |
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| T |
38645591 |
aaattatgaatatgtaactaaacaattatatttgtacattcttatttttcatatactcattcaacacatcatcttttctttatctctttttctatcgcat |
38645690 |
T |
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| Q |
116 |
cacaaatctatcacatctattattctacattttgtatttctttctctctagtggtagattgaattttgggtgtttaagaattatttattgtccatttata |
215 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38645691 |
cacaaatctatcacatctattattctatattttgtatttctttctctctagtggtagattgaattttgggtgtttaagaattatttattgtccatttata |
38645790 |
T |
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| Q |
216 |
atttagcat---acatcattgtatactaggaaaaagaatattcatctc |
260 |
Q |
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||||||||| |||||||||||||| | ||||||||||||||||||| |
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| T |
38645791 |
atttagcatcagacatcattgtataccaagaaaaagaatattcatctc |
38645838 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 26723368 - 26723419
Alignment:
| Q |
150 |
tatttctttctctctagtggtagattgaattttgggtgtttaagaattattt |
201 |
Q |
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| T |
26723368 |
tatttctttctctctagtggtagattgaatattggatgtctaggaattattt |
26723419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 2504648 - 2504740
Alignment:
| Q |
96 |
tatctctctttctatcgcatcacaaatctatcacatctattattctacattttgtatttctttctctctagtggtagattgaattttgggtgttt |
190 |
Q |
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| T |
2504648 |
tatctttctttttatagcatcattaatctatcacatctatcattttactattt--atttgtttctctctagtggtacattaaatattgggtgttt |
2504740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 27140978 - 27140886
Alignment:
| Q |
96 |
tatctctctttctatcgcatcacaaatctatcacatctattattctacattttgtatttctttctctctagtggtagattgaattttgggtgttt |
190 |
Q |
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||||| ||||| ||| |||||| |||||||||||||||| ||| ||| ||| |||| |||||||||||||||| ||| ||| |||||||||| |
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| T |
27140978 |
tatctttctttttatagcatcattaatctatcacatctatcattttactattt--atttgtttctctctagtggtacattaaatattgggtgttt |
27140886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 34360468 - 34360417
Alignment:
| Q |
150 |
tatttctttctctctagtggtagattgaattttgggtgtttaagaattattt |
201 |
Q |
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||||||| ||| | ||| ||||||||||||||| |||||||||||||||||| |
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| T |
34360468 |
tatttctctctttttagcggtagattgaattttaggtgtttaagaattattt |
34360417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 31545501 - 31545552
Alignment:
| Q |
150 |
tatttctttctctctagtggtagattgaattttgggtgtttaagaattattt |
201 |
Q |
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||||||||||||||| ||||||||||||| | ||||||| |||||| ||||| |
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| T |
31545501 |
tatttctttctctctggtggtagattgaaatctgggtgtctaagaactattt |
31545552 |
T |
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