View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11864_low_22 (Length: 257)
Name: NF11864_low_22
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11864_low_22 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 9567048 - 9566808
Alignment:
| Q |
17 |
gaatcgaaaccaaacatacgctaatatgatctctatttcaattttctgaactttgttaaagttttataaaatcgcaaaggttaccagcagtcaaggctta |
116 |
Q |
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| T |
9567048 |
gaatcgaaaccaaacatacgctaatatgatctctatttcaattttctgaactttgttaaagttttataaaatcgcaaaggttagcagcagtcaaggctta |
9566949 |
T |
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| Q |
117 |
ttaggccaaccagaatggggcatataatagcatgttgaattatgttagcattacattccttaatcttttattagttgaaattcatacgagtcctactaaa |
216 |
Q |
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| T |
9566948 |
ttaggccaaccagaatggggtatataatagcatgttgaattatgttagcattacattccttaatcttttattagttgaaattcatacgagtcctactaaa |
9566849 |
T |
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| Q |
217 |
tttatgtaaggcttacatgaataatttagtgaaattcgttt |
257 |
Q |
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| T |
9566848 |
tttatgtaaagcttacatgaataatttagtgaaattcgttt |
9566808 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 827509 - 827551
Alignment:
| Q |
181 |
cttttattagttgaaattcatacgagtcctactaaatttatgt |
223 |
Q |
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| T |
827509 |
cttttattggttgaaattcatacgggtcccactaaatttatgt |
827551 |
T |
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