View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11864_low_24 (Length: 252)
Name: NF11864_low_24
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11864_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 24854757 - 24854525
Alignment:
| Q |
1 |
atggagtttttccgcacaatagcatttggagttgaccataaagtagttgattccaatagttatattcaaatggttcacgacatgaacaattagtccgaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24854757 |
atggagtttttccgcacaatagcatttggggttgaccataaagtagttgattccaatagttatattcaaatggttcacgacatgaacaattagtccgagg |
24854658 |
T |
|
| Q |
101 |
catttttcattcaaagaatctgcaaaatagtgttgaattcattcacataccatcgtcataaatggcttttaagatttatgaaccgtaattacaactttgt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24854657 |
catttttcattcaaagaatctggaaaatagtgttgaattcattcacataccatcgtcataaatggcttttaagatttatgaaccgtaattacaactttgt |
24854558 |
T |
|
| Q |
201 |
tgccacgctgctctctgtttccattgttgtgca |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24854557 |
tgccacgctgctctctgtttccattgttgtgca |
24854525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 24537631 - 24537863
Alignment:
| Q |
1 |
atggagtttttccgcacaatagcatttggagttgaccataaagtagttgattccaatagttatattcaaatggttcacgacatgaacaattagtccgaga |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| | ||||| |||||||| | || | |
|
|
| T |
24537631 |
atggagtttttccgcgcaatagcatttggagttgaccatgaagtagttgattccagtggttatattcaaatggttgatgacatcaacaattactttgaca |
24537730 |
T |
|
| Q |
101 |
catttttcattcaaagaatctgcaaaatagtgttgaattcattcacataccatcgtcataaatggcttttaagatttatgaaccgtaattacaactttgt |
200 |
Q |
| |
|
|||||||| || || ||||||| |||||||||| || |||||||||||||| || |||| ||||| || |||||||||||||| ||||||||||| || |
|
|
| T |
24537731 |
catttttccttaaacgaatctggaaaatagtgtcgagttcattcacataccgtcatcatgggtggctgtttagatttatgaaccgcaattacaacttcgt |
24537830 |
T |
|
| Q |
201 |
tgccacgctgctctctgtttccattgttgtgca |
233 |
Q |
| |
|
||| ||| | |||||| || || ||||||||| |
|
|
| T |
24537831 |
tgcaacggttctctctattctcactgttgtgca |
24537863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 24726867 - 24726776
Alignment:
| Q |
1 |
atggagtttttccgcacaatagcatttggagttgaccataaagtagttgattccaatagttatattcaaatggttcacgacatgaacaatta |
92 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||||||||| ||||||||||| | ||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
24726867 |
atggagtttttccgcaaaatagcacttggagctgaccataaggtagttgattctagtagttatattcaaatggttgatgacataaacaatta |
24726776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 24826727 - 24826636
Alignment:
| Q |
1 |
atggagtttttccgcacaatagcatttggagttgaccataaagtagttgattccaatagttatattcaaatggttcacgacatgaacaatta |
92 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| |||||||||| ||||||||||||| || |||||||||||||||| | ||||| |||||||| |
|
|
| T |
24826727 |
atggagtttttccgcaaaatagcacttggaattgaccataaggtagttgattccagtacttatattcaaatggttgatgacatcaacaatta |
24826636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 24797533 - 24797430
Alignment:
| Q |
100 |
acatttttcattcaaagaatctgcaaaatagtgttgaattcattcacataccatcgtcataaatggcttttaagatttatgaaccgtaattacaactttg |
199 |
Q |
| |
|
|||||||||||| || |||||| |||||||||| || |||||||||||||| | |||| ||||| ||||||||| |||||| ||||||||||| | |
|
|
| T |
24797533 |
acatttttcattaaacaaatctggaaaatagtgtcgagttcattcacataccggcatcattggtggctgttaagatttttgaaccccaattacaacttcg |
24797434 |
T |
|
| Q |
200 |
ttgc |
203 |
Q |
| |
|
|||| |
|
|
| T |
24797433 |
ttgc |
24797430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 24697042 - 24696968
Alignment:
| Q |
2 |
tggagtttttccgcacaatagcatttggagttgaccataaagtagttgattccaatagttatattcaaatggttc |
76 |
Q |
| |
|
|||||| |||||||| | ||||||| |||||||||||||||||||||| || || || ||||| | ||||||||| |
|
|
| T |
24697042 |
tggagtatttccgcaaagtagcattgggagttgaccataaagtagttgcttacagtatttatactgaaatggttc |
24696968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University