View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11864_low_25 (Length: 249)
Name: NF11864_low_25
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11864_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 36013589 - 36013741
Alignment:
| Q |
1 |
agaacacctcagtcatattttgaataaaaggaaagcttcaactttatggaattataaacattgaagaggtacttgagttgtgtttaagaggacttgttgt |
100 |
Q |
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| T |
36013589 |
agaacacctcagacatattttgaataaaaggaaagcttcaactttatggaattataaacattgaagaggtacttgagttgtgtttaagaggacttcttgt |
36013688 |
T |
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| Q |
101 |
tttgaaggaaagtgtcatggtggttcactcttcttttccttagttatacataa |
153 |
Q |
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| T |
36013689 |
tttgaaggaaagtgtcatggtagttcactcttcttttccttagttatacataa |
36013741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 36013828 - 36013873
Alignment:
| Q |
193 |
aaaaaagagatacatttgcaatgttttcctcttctcagatgctctc |
238 |
Q |
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| T |
36013828 |
aaaaaagagataaatttgcaatgttttcctcttctcagatgctctc |
36013873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 36013771 - 36013809
Alignment:
| Q |
155 |
gttcaatgatttttaaggtcatgtgaacatcttatgtta |
193 |
Q |
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| T |
36013771 |
gttcattgatttttaaggtcatgtgaacatcttatgtta |
36013809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 14749833 - 14749882
Alignment:
| Q |
188 |
atgttaaaaaagagatacatttgcaatgttttcctcttctcagatgctct |
237 |
Q |
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| T |
14749833 |
atgttaaaaaagaaagacatctgcaatgttttcctcttctcggatgctct |
14749882 |
T |
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