View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11864_low_28 (Length: 228)
Name: NF11864_low_28
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11864_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 19185003 - 19185201
Alignment:
| Q |
18 |
ctaacaacatcaaccctagatcaaaacctaggaatatcgatcatcgaatccaacatattcgccatcgatcatgtcaacatgcagccttcaaaaaatattt |
117 |
Q |
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| T |
19185003 |
ctaacaacatcaaccctagatcaaaacctaggaatatcgatcatcaaatccaacatattagccatcgatcatgtcaacatgcagccttcaaaaaatattt |
19185102 |
T |
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| Q |
118 |
gaaaatcctccattgtatgcagaaaacccaactatacttcttgatcaatctcttgaatcatggaagaaccaaatcaaacccatacaacattcttcttct |
216 |
Q |
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| T |
19185103 |
gaaaatcctccattgtatccagaaaacccaactatacttcttgatcaatctcttgaatcatggaagaaccaaatcaaacccatacaacattcttcttct |
19185201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 19184928 - 19184973
Alignment:
| Q |
23 |
aacatcaaccctagatcaaaacctaggaatatcgatcatcgaatcc |
68 |
Q |
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| T |
19184928 |
aacatcaaccctagatcaaaacctaggaatatcaatcatcgaatcc |
19184973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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