View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11864_low_29 (Length: 222)
Name: NF11864_low_29
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11864_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 24564391 - 24564579
Alignment:
| Q |
18 |
tcaatgaatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattatttt |
117 |
Q |
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| T |
24564391 |
tcaatgaatatggtttggaatgggtattaaatgtattggcatgtataaagcatcggaatatacacagagacactaacatctgaacaccgacaattatttt |
24564490 |
T |
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| Q |
118 |
aaaaaataatataattcaatataatcacatgtatctatatcttgtaggcgacgaatacggggacgtatcaaacaccaaaacacgcctatg |
207 |
Q |
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| T |
24564491 |
aaaaaataatataattcaatgtaatcacatgtatctatattttgtaggcgacgaatacgggaacgtatcagacacc-aaacacgcctatg |
24564579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 9800618 - 9800805
Alignment:
| Q |
18 |
tcaatgaatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattatttt |
117 |
Q |
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| T |
9800618 |
tcaatgaatatggttatgaatgggtattaaatgtattagcatgtataaagcatcagcatatacatagagacactaacatctgaataccgataatta-ttt |
9800716 |
T |
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| Q |
118 |
aaaaaataatataattcaatataatcacatgtatctatatcttgtaggcgacgaatacggggacgtatcaaacaccaaaacacgcctatg |
207 |
Q |
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| T |
9800717 |
aaaaaataatataattcaatctattcacatgtatctatatcttgtcggtgtcgaatactgggacatatgagacacc-aaacacgcctatg |
9800805 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 45535068 - 45534957
Alignment:
| Q |
22 |
tgaatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaa |
121 |
Q |
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||||| ||||| ||| ||||| ||| ||||||||||||||||||| | | ||||||| |||||||||||||| ||||||| || ||||||||||||| |
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| T |
45535068 |
tgaatctggttaggactgggtgctaagtgtattagcatgtataaagcaacaacatatacatagagacactaacatgtgaacactgataattattttaaaa |
45534969 |
T |
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| Q |
122 |
aataatataatt |
133 |
Q |
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| T |
45534968 |
aataatataatt |
45534957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 36 - 158
Target Start/End: Original strand, 44338451 - 44338572
Alignment:
| Q |
36 |
aatgggtattaaatgtattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattca |
135 |
Q |
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| T |
44338451 |
aatggctattaaatgtattagcatgtataaaacgtcgacatatacccagagacattaacatgtgaacaaagacaatta-tttgagaaataacacaattaa |
44338549 |
T |
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| Q |
136 |
atataatcacatgtatctatatc |
158 |
Q |
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| T |
44338550 |
atataatcatatgtatctatatc |
44338572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 34745205 - 34745241
Alignment:
| Q |
116 |
ttaaaaaataatataattcaatataatcacatgtatc |
152 |
Q |
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| T |
34745205 |
ttaaaaaataacataattcaatataatcacatgtatc |
34745241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 29519195 - 29519244
Alignment:
| Q |
100 |
aacaccgacaattattttaaaaaataatataattcaatataatcacatgt |
149 |
Q |
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| T |
29519195 |
aacaccgataataattttaaaaaatcatataattcaatgtaataacatgt |
29519244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 19679993 - 19680033
Alignment:
| Q |
113 |
attttaaaaaataatataattcaatataatcacatgtatct |
153 |
Q |
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|||||||||||||| |||||| |||||||||||||| |||| |
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| T |
19679993 |
attttaaaaaataacataattgaatataatcacatgcatct |
19680033 |
T |
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