View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11864_low_4 (Length: 522)
Name: NF11864_low_4
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11864_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Original strand, 10490098 - 10490616
Alignment:
| Q |
18 |
gatatgtcccaaagtgtcgctagttttgcttatgtttgcatgaacgcatgcaagtatcagtaggtgaatgagtgaatcaaggatgagagtagaattagga |
117 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
10490098 |
gatatgtgccaaagtgtcgctagttttgcttatgtttgcatgaacgcgtgcaagtatcagtagg--aatgagtgaatcaaggatgagagtagaattagaa |
10490195 |
T |
|
| Q |
118 |
actgagcagactnnnnnnnncat--cattaaagttagaagtccataatttgtctcacaaattcacgattttcctaacacagtcaaattaaaactttccat |
215 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
10490196 |
actgagcagactaaaaaaaaaatatcattaaagttagaagtccataatttgtctctcaaattcacgattttccaaacacagtcagattaaaactttccat |
10490295 |
T |
|
| Q |
216 |
ggtcacaggcagaatggaaagtaggagagaaaaaa-ccaaagcataatggcaca----------------ctccaatttccagaacagaatatcacactt |
298 |
Q |
| |
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||||||||||||||| |||||||| |||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
10490296 |
ggtcacaggcagaatagaaagtagaagagaaaaaaaccaaagcataatggcacagctcattgttgagacactccaatttccagaatagaatatcacactt |
10490395 |
T |
|
| Q |
299 |
gaaatgtttttt-cactttatcaacaaaa-caaagagacaaccataatcccaagagccatcagctctacatgaatgaaaaaacccaattcaatcatttaa |
396 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
10490396 |
gaaatgtttttttcactttatcaacaaaaacaaagagacaaccataatcccaagagccatcagctctacatgaacgaataaacccaattcaatcatttaa |
10490495 |
T |
|
| Q |
397 |
aagcagtatcataacccatgaatcattgcattgcactcaatccaaaaattaatcatcaaaacatgaaaatgactaaatacatacaacactaagtccactc |
496 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
10490496 |
aagcagcatcataacccatgaatcattgcattgcactcaatccaaaaattaatcatcaaaacatgaaaatgaataaatacatacgacactaagtccactc |
10490595 |
T |
|
| Q |
497 |
actcacattatttcatctcac |
517 |
Q |
| |
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|||||||||||||||| |||| |
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| T |
10490596 |
actcacattatttcatttcac |
10490616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 35349315 - 35349486
Alignment:
| Q |
101 |
tgagagtagaattaggaactgagcagactnnnnnnnncatcattaaagttagaagtccataatttgtctcacaaattcacgattttcctaacacagtc-- |
198 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||||| |
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| T |
35349315 |
tgagagtagaattaggaactgagcagacaaaaaaaaccatcattaaagttagaagtccataatttgtctctcaaagttacgatttttctaacacagtcaa |
35349414 |
T |
|
| Q |
199 |
-----------aaattaaaactttccatggtcacaggcagaatggaaagtaggagagaaaaaaccaaagcat |
259 |
Q |
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||| |||||||||||| | |||||||||||| ||||||||| ||| ||||||||||||||| |
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| T |
35349415 |
actatatatcaaaagtaaaactttccaggctcacaggcagaacggaaagtagaagataaaaaaccaaagcat |
35349486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 2276392 - 2276563
Alignment:
| Q |
101 |
tgagagtagaattaggaactgagcagactnnnnnnnncatcattaaagttagaagtccataatttgtctcacaaattcacgattttcctaacacagtc-- |
198 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||||| |
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| T |
2276392 |
tgagagtagaattaggaactgagcagacaaaaaaaaccatcattaaagttagaagtccataatttgtctctcaaagttacgatttttctaacacagtcaa |
2276491 |
T |
|
| Q |
199 |
-----------aaattaaaactttccatggtcacaggcagaatggaaagtaggagagaaaaaaccaaagcat |
259 |
Q |
| |
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||| |||||||||||| | |||||||||||| ||||||||| ||| ||||||||||||||| |
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| T |
2276492 |
actatatatcaaaagtaaaactttccaggctcacaggcagaacggaaagtagaagataaaaaaccaaagcat |
2276563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 39347883 - 39348054
Alignment:
| Q |
101 |
tgagagtagaattaggaactgagcagactnnnnnnnncatcattaaagttagaagtccataatttgtctcacaaattcacgattttcctaacacagtc-- |
198 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||||| |
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| T |
39347883 |
tgagagtagaattaggaactgagcagacaaaaaaaaccatcattaaagttagaagtccataatttgtctctcaaagttacgatttttctaacacagtcaa |
39347982 |
T |
|
| Q |
199 |
-----------aaattaaaactttccatggtcacaggcagaatggaaagtaggagagaaaaaaccaaagcat |
259 |
Q |
| |
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||| |||||||||||| | |||||||||||| ||||||||| ||| ||||||||||||||| |
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| T |
39347983 |
actatatatcaaaagtaaaactttccaggctcacaggcagaacggaaagtagaagataaaaaaccaaagcat |
39348054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 4013726 - 4013897
Alignment:
| Q |
101 |
tgagagtagaattaggaactgagcagactnnnnnnnncatcattaaagttagaagtccataatttgtctcacaaattcacgattttcctaacacagtc-- |
198 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||||| |
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| T |
4013726 |
tgagagtagaattaggaactgagcagacaaaaaaaaccatcattaaagttagaagtccataatttgtctctcaaagttacgatttttctaacacagtcaa |
4013825 |
T |
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| Q |
199 |
-----------aaattaaaactttccatggtcacaggcagaatggaaagtaggagagaaaaaaccaaagcat |
259 |
Q |
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||| |||||||||||| | |||||||||||| ||||||||| ||| ||||||||||||||| |
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| T |
4013826 |
actatatatcaaaagtaaaactttccaggctcacaggcagaacggaaagtagaagataaaaaaccaaagcat |
4013897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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