View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11864_low_7 (Length: 489)
Name: NF11864_low_7
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11864_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Complemental strand, 30535818 - 30535389
Alignment:
| Q |
18 |
ctacaaatatggatacatgctaaccagccaccatgcacaaatcatcctctttcacaatgcaacatatctattctacctttaacaaaatatgattcaaact |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30535818 |
ctacaaatatggatacatgctaaccagccaccatgcacaaatcatcctctttcacaatgcaacatatctattctaccgttaacaaaatatgattcaaact |
30535719 |
T |
|
| Q |
118 |
agggtttgaatcatatggcagctagggtttgtaatttcttgagaaaatattcaaaaaagtaagcaaagtgtctgctacttttaacttgttaaggtacaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30535718 |
agggtttgaatcatatggcagctagggtttgtaatttcttgagaaaatattcaaaaaagtaagaaaagtgtctgctacttttaacttgttaaggtacaat |
30535619 |
T |
|
| Q |
218 |
agtccgtcatcaatttcttttcatttaggagaaaatttcaataaccaaaataaggtaataaagttgcatactaacccttcaaattcttctcttgcgtttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30535618 |
agtccgtcatcaatttcttttcatttaggagaaaatttcaataaccaaaataaggtaataaagttgcatactaacccttcaaattcttctcttgcgtttt |
30535519 |
T |
|
| Q |
318 |
aaacgtttcaacaaagattgcactccttcttgcaaagttgctttccttccctttttgtagttccataattctgaggttacatatctcccactaggattac |
417 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30535518 |
aaacgtttcaacaaagattgtactccttcttgcaaagttgctttccttccctctttgtagttccataattctgaggttacatatctcccactaggattac |
30535419 |
T |
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| Q |
418 |
attcattcatcttcatcaaagctttcacca |
447 |
Q |
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| T |
30535418 |
attcattcatcttcatcaaagctttcacca |
30535389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 338 - 477
Target Start/End: Complemental strand, 30449374 - 30449235
Alignment:
| Q |
338 |
cactccttcttgcaaagttgctttccttccctttttgtagttccataattctgaggttacatatctcccactaggattacattcattcatcttcatcaaa |
437 |
Q |
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|||||||||||||||||||||| |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| | | ||| |
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| T |
30449374 |
cactccttcttgcaaagttgctctccttcccgctttatagttccataactctgaggttacatatctcccactaggattatattcattaatctccgttaaa |
30449275 |
T |
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| Q |
438 |
gctttcaccactgcattatatgccctttcacccacttctt |
477 |
Q |
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| | |||||| ||| |||||||| ||||||||||||||| |
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| T |
30449274 |
gatgccaccacggcactatatgccttttcacccacttctt |
30449235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 341 - 460
Target Start/End: Complemental strand, 30457128 - 30457009
Alignment:
| Q |
341 |
tccttcttgcaaagttgctttccttccctttttgtagttccataattctgaggttacatatctcccactaggattacattcattcatcttcatcaaagct |
440 |
Q |
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|||||||||||| |||||| ||||| ||| ||||| |||||||| ||||||| ||| | ||| |||||||||||| |||||||||||| |||||||| |
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| T |
30457128 |
tccttcttgcaatgttgctctcctttcctctttgtggttccatagttctgagattagacatccaccactaggattatattcattcatctctttcaaagct |
30457029 |
T |
|
| Q |
441 |
ttcaccactgcattatatgc |
460 |
Q |
| |
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|| |||| |||| |||||| |
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| T |
30457028 |
atcgccacggcatcatatgc |
30457009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 30450487 - 30450423
Alignment:
| Q |
18 |
ctacaaatatggatacatgctaaccagccaccatgcacaaatcatcctctttcacaatgcaacat |
82 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||| || |||| |||||||||||| |
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| T |
30450487 |
ctacaaatatggatacatgctaaccagccgccatgcacaaattattctctcggacaatgcaacat |
30450423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 429
Target Start/End: Complemental strand, 30475600 - 30475512
Alignment:
| Q |
341 |
tccttcttgcaaagttgctttccttccctttttgtagttccataattctgaggttacatatctcccactaggattacattcattcatct |
429 |
Q |
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|||||||||||| |||||| ||||| || | |||||||||||||||||| || ||||| |||||||||||| |||||||||||| |
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| T |
30475600 |
tccttcttgcaatgttgctctccttttctcactatagttccataattctgagattggatatccgccactaggattatattcattcatct |
30475512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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