View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11865_high_11 (Length: 359)

Name: NF11865_high_11
Description: NF11865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11865_high_11
NF11865_high_11
[»] chr1 (5 HSPs)
chr1 (40-359)||(48507668-48507988)
chr1 (289-357)||(14644837-14644905)
chr1 (288-357)||(47978335-47978404)
chr1 (288-350)||(6932092-6932154)
chr1 (309-357)||(22548186-22548234)
[»] chr7 (2 HSPs)
chr7 (289-355)||(45557481-45557547)
chr7 (289-355)||(38123569-38123635)
[»] chr6 (2 HSPs)
chr6 (289-354)||(30927107-30927172)
chr6 (289-353)||(34026390-34026454)
[»] chr3 (2 HSPs)
chr3 (288-353)||(51285685-51285750)
chr3 (20-68)||(2657735-2657783)
[»] scaffold0097 (1 HSPs)
scaffold0097 (24-68)||(36430-36474)
[»] chr8 (2 HSPs)
chr8 (289-357)||(43024941-43025010)
chr8 (316-357)||(33733156-33733197)
[»] chr2 (3 HSPs)
chr2 (306-354)||(11650661-11650709)
chr2 (289-357)||(30503323-30503391)
chr2 (306-357)||(37745785-37745836)
[»] chr4 (3 HSPs)
chr4 (151-218)||(18508708-18508775)
chr4 (309-358)||(17897794-17897843)
chr4 (310-357)||(53158946-53158994)
[»] chr5 (2 HSPs)
chr5 (304-357)||(36927588-36927641)
chr5 (309-357)||(9818870-9818918)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 40 - 359
Target Start/End: Complemental strand, 48507988 - 48507668
Alignment:
Q  40 taatatgatccagagtcaaataagacatagtaaccaaaagacattcaatagataaatagatacacattcttagtgtttt-gaaatggtcaaaattaatca 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48507988 taatatgatccagagtcaaataagacatagtaaccaaaagacattcaatagataaatagatacacattcttagtgttttagaaatggtcaaaattaatca 48507889  T
Q  139 tggatgtgtaggattgattcaaacatatttgattgcttttgagtataatttattttgtctttaaaattgattttatttgagactatgaattgtatggtct 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48507888 tggatgtgtaggattgattcaaacatatttgattgcttttgagtataatttattttgtctttaaaattgattttatttgagactatgaattgtatggtct 48507789  T
Q  239 ctagaatcatagagatgcaaaattaattttatttacacataaatttaatattcaactcacttttcgtcataatcaaatcactcaaaattaatttttgtca 338  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  48507788 ctagaatcatagagatgcaaaattaattttatttacacaaaaatttaaaattcaactcacttttcatcataatcaaatcactcaaaattaatttttatca 48507689  T
Q  339 ctgcaaaaccaaacatacata 359  Q
     ||||||||||||||||||||    
T  48507688 ttgcaaaaccaaacatacata 48507668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 289 - 357
Target Start/End: Original strand, 14644837 - 14644905
Alignment:
Q  289 ttcaactcacttttcgtcataatcaaatcactcaaaattaatttttgtcactgcaaaaccaaacataca 357  Q
    |||||| ||||||| ||||||||||| ||||| |||||||||| ||||||| |||||| ||||||||||    
T  14644837 ttcaacacacttttagtcataatcaattcacttaaaattaattcttgtcaccgcaaaatcaaacataca 14644905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 357
Target Start/End: Complemental strand, 47978404 - 47978335
Alignment:
Q  288 attcaactcacttttcgtcataatcaaatcactcaaaattaatttttgtcactgcaaaaccaaacataca 357  Q
    |||||||||||||||   || |||||| ||||||||||| |||| ||||||| ||||||||| |||||||    
T  47978404 attcaactcacttttacccaaaatcaattcactcaaaatgaattcttgtcaccgcaaaaccatacataca 47978335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 350
Target Start/End: Complemental strand, 6932154 - 6932092
Alignment:
Q  288 attcaactcacttttcgtcataatcaaatcactcaaaattaatttttgtcactgcaaaaccaa 350  Q
    ||||||||||||||| |||| |||||| ||| ||||||| || ||||||||| ||| ||||||    
T  6932154 attcaactcacttttagtcagaatcaattcattcaaaatcaaattttgtcaccgcagaaccaa 6932092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 22548234 - 22548186
Alignment:
Q  309 aatcaaatcactcaaaattaatttttgtcactgcaaaaccaaacataca 357  Q
    |||||| ||||| ||||| ||||||| |||| |||||||||||||||||    
T  22548234 aatcaattcacttaaaatcaatttttatcaccgcaaaaccaaacataca 22548186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 45557481 - 45557547
Alignment:
Q  289 ttcaactcacttttcgtcataatcaaatcactcaaaattaatttttgtcactgcaaaaccaaacata 355  Q
    |||||||||||||| |||| |||||| ||| ||||||| ||||  ||||||||||||||||||||||    
T  45557481 ttcaactcacttttagtcagaatcaattcattcaaaatcaattcctgtcactgcaaaaccaaacata 45557547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 38123635 - 38123569
Alignment:
Q  289 ttcaactcacttttcgtcataatcaaatcactcaaaattaatttttgtcactgcaaaaccaaacata 355  Q
    ||||||||| |||| ||||||||||| | |||||||||| || ||| |||| ||| |||||||||||    
T  38123635 ttcaactcaattttagtcataatcaatttactcaaaatttatatttctcaccgcagaaccaaacata 38123569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 30927107 - 30927172
Alignment:
Q  289 ttcaactcacttttcgtcataatcaaatcactcaaaattaatttttgtcactgcaaaaccaaacat 354  Q
    ||||||||||||||||||| |||||| |||||||| || |||| || || ||||||||||||||||    
T  30927107 ttcaactcacttttcgtcagaatcaactcactcaagatcaattattttctctgcaaaaccaaacat 30927172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 34026454 - 34026390
Alignment:
Q  289 ttcaactcacttttcgtcataatcaaatcactcaaaattaatttttgtcactgcaaaaccaaaca 353  Q
    |||||||||||||| | || |||||| |||||||||||  ||| ||||||| |||||||||||||    
T  34026454 ttcaactcacttttagccagaatcaattcactcaaaatatattcttgtcacagcaaaaccaaaca 34026390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 353
Target Start/End: Original strand, 51285685 - 51285750
Alignment:
Q  288 attcaactcacttttcgtcataatcaaatcactcaaaattaatttttgtcactgcaaaaccaaaca 353  Q
    ||||||||||||||| | |||||| || ||||||||||| ||||||| |||| |||||||||||||    
T  51285685 attcaactcacttttagccataataaattcactcaaaatcaatttttctcaccgcaaaaccaaaca 51285750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 2657735 - 2657783
Alignment:
Q  20 aactgcaatctaacatgaaataatatgatccagagtcaaataagacata 68  Q
    ||||||||||  |||||||||||||  ||||||||||||||||| ||||    
T  2657735 aactgcaatcctacatgaaataataaaatccagagtcaaataaggcata 2657783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 36474 - 36430
Alignment:
Q  24 gcaatctaacatgaaataatatgatccagagtcaaataagacata 68  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||    
T  36474 gcaatctaacatgaaataatataatccagagtcaaataaggcata 36430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 357
Target Start/End: Original strand, 43024941 - 43025010
Alignment:
Q  289 ttcaactcacttttc-gtcataatcaaatcactcaaaattaatttttgtcactgcaaaaccaaacataca 357  Q
    ||||||||||||||  ||||| ||||| ||| ||||||| |||||||||||| ||||| |||||||||||    
T  43024941 ttcaactcactttttagtcatgatcaattcaatcaaaatcaatttttgtcaccgcaaacccaaacataca 43025010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 33733156 - 33733197
Alignment:
Q  316 tcactcaaaattaatttttgtcactgcaaaaccaaacataca 357  Q
    |||||||||||||||| ||||||||||| || ||||||||||    
T  33733156 tcactcaaaattaattattgtcactgcataatcaaacataca 33733197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 11650709 - 11650661
Alignment:
Q  306 cataatcaaatcactcaaaattaatttttgtcactgcaaaaccaaacat 354  Q
    ||||||||| ||||||||||| |||||||||||  ||||||||||||||    
T  11650709 cataatcaattcactcaaaatcaatttttgtcaacgcaaaaccaaacat 11650661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 357
Target Start/End: Original strand, 30503323 - 30503391
Alignment:
Q  289 ttcaactcacttttcgtcataatcaaatcactcaaaattaatttttgtcactgcaaaaccaaacataca 357  Q
    ||||||| |||||| |||| |||||| |||||||||||  ||| |||||| |||| |||||||||||||    
T  30503323 ttcaactaacttttagtcagaatcaattcactcaaaatcgattattgtcattgcataaccaaacataca 30503391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 37745836 - 37745785
Alignment:
Q  306 cataatcaaatcactcaaaattaatttttgtcactgcaaaaccaaacataca 357  Q
    ||||||||| ||||||||||| |||| || |||| |||||||||||||||||    
T  37745836 cataatcaattcactcaaaatcaattattatcaccgcaaaaccaaacataca 37745785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 18508775 - 18508708
Alignment:
Q  151 attgattcaaacatatttgattgcttttgagtataatttattttgtctttaaaattgattttatttga 218  Q
    ||||||||||||||||||||||| |||| |||   ||| |||||||||| | ||||||||||| ||||    
T  18508775 attgattcaaacatatttgattgtttttaagttgtattgattttgtcttcagaattgattttacttga 18508708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 17897843 - 17897794
Alignment:
Q  309 aatcaaatcactcaaaattaatttttgtcactgcaaaaccaaacatacat 358  Q
    |||||| ||||||||||| |||||||||||| ||| ||||||||| ||||    
T  17897843 aatcaattcactcaaaatcaatttttgtcaccgcagaaccaaacaaacat 17897794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 53158994 - 53158946
Alignment:
Q  310 atcaaatcactcaaaattaa-tttttgtcactgcaaaaccaaacataca 357  Q
    ||||| ||||||||||| || |||||||||| |||||||||||||||||    
T  53158994 atcaattcactcaaaatcaactttttgtcaccgcaaaaccaaacataca 53158946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 36927641 - 36927588
Alignment:
Q  304 gtcataatcaaatcactcaaaattaatttttgtcactgcaaaaccaaacataca 357  Q
    |||| |||||| ||| ||||||| ||||||| ||| ||||||||||||||||||    
T  36927641 gtcagaatcaattcagtcaaaatcaatttttctcaatgcaaaaccaaacataca 36927588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 9818870 - 9818918
Alignment:
Q  309 aatcaaatcactcaaaattaatttttgtcactgcaaaaccaaacataca 357  Q
    |||||| ||||||||||| |||| ||||||| ||| |||||||||||||    
T  9818870 aatcaattcactcaaaataaattcttgtcaccgcagaaccaaacataca 9818918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University