View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11865_high_6 (Length: 537)

Name: NF11865_high_6
Description: NF11865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11865_high_6
NF11865_high_6
[»] chr6 (6 HSPs)
chr6 (116-527)||(11121060-11121471)
chr6 (429-520)||(1122202-1122293)
chr6 (426-515)||(18898897-18898986)
chr6 (473-515)||(19430326-19430368)
chr6 (473-515)||(22514533-22514575)
chr6 (435-508)||(22460488-22460561)
[»] chr7 (7 HSPs)
chr7 (127-527)||(21291961-21292373)
chr7 (426-515)||(9174884-9174973)
chr7 (426-515)||(21949747-21949836)
chr7 (426-515)||(6617022-6617111)
chr7 (426-515)||(46809031-46809120)
chr7 (426-515)||(34638492-34638581)
chr7 (426-515)||(42053618-42053707)
[»] chr4 (15 HSPs)
chr4 (213-422)||(37011223-37011431)
chr4 (212-523)||(29688941-29689262)
chr4 (134-388)||(29689319-29689573)
chr4 (426-507)||(27020261-27020342)
chr4 (426-515)||(36316211-36316300)
chr4 (426-515)||(36330420-36330509)
chr4 (426-515)||(34806279-34806368)
chr4 (426-515)||(39295911-39296000)
chr4 (426-515)||(5948179-5948268)
chr4 (441-509)||(53095208-53095276)
chr4 (435-518)||(33287453-33287536)
chr4 (435-522)||(37011111-37011198)
chr4 (454-523)||(1206544-1206612)
chr4 (442-511)||(34446702-34446771)
chr4 (441-520)||(32107443-32107525)
[»] chr8 (10 HSPs)
chr8 (165-427)||(3730155-3730416)
chr8 (426-523)||(18464711-18464808)
chr8 (426-527)||(31441781-31441882)
chr8 (218-360)||(11756441-11756579)
chr8 (426-515)||(12498713-12498802)
chr8 (426-515)||(18381357-18381446)
chr8 (426-515)||(39617899-39617988)
chr8 (453-508)||(22935494-22935548)
chr8 (426-515)||(6420900-6420989)
chr8 (463-514)||(15988073-15988124)
[»] chr2 (7 HSPs)
chr2 (237-377)||(12111633-12111773)
chr2 (426-509)||(4647944-4648027)
chr2 (426-527)||(19622557-19622658)
chr2 (453-515)||(30960858-30960919)
chr2 (453-515)||(7647590-7647651)
chr2 (444-514)||(17419091-17419161)
chr2 (426-515)||(40267805-40267894)
[»] chr5 (8 HSPs)
chr5 (426-515)||(40835033-40835122)
chr5 (426-509)||(1594553-1594636)
chr5 (426-515)||(5808339-5808428)
chr5 (426-515)||(16484938-16485027)
chr5 (426-515)||(39004874-39004963)
chr5 (426-515)||(39560908-39560997)
chr5 (462-515)||(641016-641069)
chr5 (426-515)||(16482489-16482578)
[»] chr3 (13 HSPs)
chr3 (426-515)||(3335962-3336051)
chr3 (441-514)||(25899153-25899226)
chr3 (426-515)||(33951682-33951771)
chr3 (435-515)||(47330053-47330133)
chr3 (426-515)||(22402398-22402487)
chr3 (426-515)||(37969168-37969257)
chr3 (438-515)||(4062400-4062477)
chr3 (418-515)||(4545679-4545776)
chr3 (426-515)||(28414066-28414155)
chr3 (441-503)||(23687689-23687750)
chr3 (441-503)||(24059926-24059987)
chr3 (454-527)||(46028310-46028382)
chr3 (454-518)||(587312-587374)
[»] chr1 (14 HSPs)
chr1 (426-515)||(2843948-2844037)
chr1 (426-515)||(38981055-38981144)
chr1 (426-515)||(2027818-2027907)
chr1 (426-515)||(18414527-18414616)
chr1 (426-515)||(28641572-28641661)
chr1 (426-515)||(32519751-32519840)
chr1 (426-515)||(45541457-45541546)
chr1 (426-515)||(49008163-49008252)
chr1 (426-515)||(8110684-8110773)
chr1 (454-527)||(32829231-32829303)
chr1 (435-515)||(24779852-24779932)
chr1 (454-527)||(5965116-5965188)
chr1 (454-526)||(15853336-15853407)
chr1 (468-527)||(36085789-36085848)
[»] scaffold0009 (1 HSPs)
scaffold0009 (426-515)||(194654-194743)
[»] scaffold0256 (1 HSPs)
scaffold0256 (426-515)||(4038-4127)


Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 116 - 527
Target Start/End: Original strand, 11121060 - 11121471
Alignment:
Q  116 ccgccatgactggtgctatggttggttctcgcgcttttggcaaaaaccacacgggttggtgtgattcaaatcagttccgcactttcgggttctaaatgtg 215  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| || ||||||||| |||||||  |||    
T  11121060 ccgccatgactggtgctatggttggttctcgcgctttgggaaaaaaccacacgggttggtgttattcaaatcagatctgcactttcgagttctaagcgtg 11121159  T
Q  216 tgggttctgtcagatggcagctccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttg 315  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  11121160 tgggttctgtcagatggcagctccatttgacaaagtattcagattgataggctagaaacggtcatacaaacttgttgtcttgtgtctcaatgagtggttc 11121259  T
Q  316 gtgggtgtattcgctaccgtgttggcggtcaaattcattgccattggtaaaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggcttgt 415  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||    
T  11121260 gcgggtgtattcgctaccgcgttggcggtcaaattcattgccattggtaaaaggttggagttcataattgtgcctaagttgtgcttgcatgatggcttgt 11121359  T
Q  416 tgtgggccagaatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  11121360 tgtgggccagaatttgctattgatcatcgcagtaaacggttggtgcgtgtggattcgttaattaccgtgttggcggtcgaatccactccccactttcaag 11121459  T
Q  516 catctgtctgtg 527  Q
    ||||||||||||    
T  11121460 catctgtctgtg 11121471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 429 - 520
Target Start/End: Original strand, 1122202 - 1122293
Alignment:
Q  429 ttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatct 520  Q
    |||||| ||||||| | | ||||| |||| ||| |||||||||  ||||||||||||||||||| |||||||||||||||| ||||| ||||    
T  1122202 ttgctagtgatcatagtattaaaccgttgttgcgtgtggattcgctaattaccgtgttggcggtcgaatccactccccactctcaagaatct 1122293  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 18898897 - 18898986
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  18898897 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 18898986  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 515
Target Start/End: Complemental strand, 19430368 - 19430326
Alignment:
Q  473 ttaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  19430368 ttaattaccgtgttggcggttgaatctactccccactctcaag 19430326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 515
Target Start/End: Complemental strand, 22514575 - 22514533
Alignment:
Q  473 ttaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  22514575 ttaattaccgtgttggcggttgaatctactccccactctcaag 22514533  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 22460561 - 22460488
Alignment:
Q  435 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccac 508  Q
    ||||| |||||| |||| ||||||||  ||| |||||  || |||||||||||||||||||||| |||||||||    
T  22460561 ttgatgatcgcattaaatggttggtgtgtgttgattcgctatttaccgtgttggcggttgaatctactccccac 22460488  T

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Target: chr7 (Bit Score: 136; Significance: 1e-70; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 127 - 527
Target Start/End: Original strand, 21291961 - 21292373
Alignment:
Q  127 ggtgctatggttggttctcgcgcttttggcaaaaaccacacgggttggtgtgattcaaatcagttccgcactttcgggttctaaatgtgtgggttctgtc 226  Q
    ||||||||||||||| |||| | ||| ||||||||    ||||||||||||||||  ||||||||  ||||||||||||||  |   |||||||| ||||    
T  21291961 ggtgctatggttggtgctcgtgttttgggcaaaaattgtacgggttggtgtgatttgaatcagttatgcactttcgggttccgagcatgtgggttatgtc 21292060  T
Q  227 agatggcagctccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtatt 326  Q
     |||||| ||||||||||||| || || || |||||| ||| | |||| ||| |||||||||| |||||| ||||||| ||||||||||||||||| | |    
T  21292061 ggatggccgctccatttgacggaggatccaaattgatgggccaaaaatagtcgtacaaacttgatgtcttctgtctcagtgagtggttggtgggtggact 21292160  T
Q  327 cgctaccgtgttggcggtcaaattcattgccattggtaaaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggcttgttgtgggccag- 425  Q
    |||| ||||||| | ||||  ||||||| ||||||||||||| |||||||||| |||| ||||||| ||||||||| ||||| ||||| ||||||| ||     
T  21292161 cgctgccgtgttcgtggtcggattcatttccattggtaaaaggttggagttcagacttatgcctagtttgtgcttgtatgatcgcttgatgtgggctaga 21292260  T
Q  426 -----------aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaa 514  Q
               |||||| | ||||||||||||||||||||||||||| |||  |||| ||||||||||||||||||||  | |||||||||||||| |||    
T  21292261 aatggctgattaatttgttgttgatcatcgcagtaaacggttggtgcgtgttaattcgttaattaccgtgttggcggtcaagtccactccccacttgcaa 21292360  T
Q  515 gcatctgtctgtg 527  Q
    |||||||| ||||    
T  21292361 gcatctgtttgtg 21292373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 9174884 - 9174973
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  ||||||||| |||||||||||||||| |||||||||| |||||    
T  9174884 aatttgatgttgatcatagcagtaaacagttagtgcgtgtggatttgttaattaccatgttggcggttgaatcaactccccactctcaag 9174973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 21949747 - 21949836
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  21949747 aatttgatgttgatcatagcagtaaacagttcgtgcgtgtggattttttaattaccgtgttggtggttgaatctactccccactctcaag 21949836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 6617111 - 6617022
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  6617111 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 6617022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 46809120 - 46809031
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  46809120 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccactctcaag 46809031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 34638492 - 34638581
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| ||| |||||| |||||    
T  34638492 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccactctcaag 34638581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 42053707 - 42053618
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| ||| |||||| |||||    
T  42053707 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccactctcaag 42053618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 213 - 422
Target Start/End: Complemental strand, 37011431 - 37011223
Alignment:
Q  213 gtgtgggttctgtcagatggcagctccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtgg 312  Q
    ||||||||| |||  ||||| |||||||||||| | || ||||||||||||||||||||||||||| |||||||||| ||| | |||||| | |||||||    
T  37011431 gtgtgggttttgttggatggtagctccatttgatggaggattcagattgataggctagaaatggtcgtacaaacttgatgtatggtgtcttagtgagtgg 37011332  T
Q  313 ttggtgggtgtattcgctaccgtgttggcggtcaaattcattgccattggtaaaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggct 412  Q
    |||||| ||| |||||||| |||||||||||||  |||||||||||||||| |||| ||||| || | ||||||||||| ||||||||||  |||| |||    
T  37011331 ttggtgagtggattcgctatcgtgttggcggtcggattcattgccattggt-aaaggttggattttagacttgtgcctatgttgtgcttgtgtgatcgct 37011233  T
Q  413 tgttgtgggc 422  Q
    | ||||||||    
T  37011232 ttttgtgggc 37011223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 212 - 523
Target Start/End: Complemental strand, 29689262 - 29688941
Alignment:
Q  212 tgtgtgggttctgtcagatggcagctccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtg 311  Q
    |||||||||| |||| |||||| |||| |||||||| || ||||| |||||||| ||| |||||  | |||||||||||||||| |||| ||| ||||||    
T  29689262 tgtgtgggttatgtcggatggcggctctatttgacggaggattcaaattgatagactaaaaatgaccgtacaaacttgttgtctagtgtgtcagtgagtg 29689163  T
Q  312 gttggtgggtgtattcgctaccgtgttggcggtcaaattcattgccattggtaaaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggc 411  Q
    |||||| |||| || |||||||||||||||| ||   |||||||||||||||  ||| |||||| ||| |||||||||||||||||||| | ||||   |    
T  29689162 gttggtaggtggatccgctaccgtgttggcgatc-ggttcattgccattggt-gaaggttggagctcagacttgtgcctaggttgtgctagtatgaccac 29689065  T
Q  412 ttgttgtgggccag------------aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatcc 499  Q
     ||||||||||  |            |||||| | || |||||||||||||||| |||||||  ||||||||  ||||||||||||||||||| ||| ||    
T  29689064 atgttgtgggctggaaatgactgattaatttgttgttaatcatcgcagtaaacgattggtgcgcgtggattcgctaattaccgtgttggcggtcgaaccc 29688965  T
Q  500 actccccactttcaagcatctgtc 523  Q
    ||||||||||||||||||| ||||    
T  29688964 actccccactttcaagcatttgtc 29688941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 134 - 388
Target Start/End: Complemental strand, 29689573 - 29689319
Alignment:
Q  134 tggttggttctcgcgcttttggcaaaaaccacacgggttggtgtgattcaaatcagttccgcac--tttcgggttctaaatgtgtgggttctgtcagatg 231  Q
    ||||||||||||||| ||| ||||||| |  |||||||||||||||||| | |||  || ||||  |||| | |||  | |||||||||| |||| ||||    
T  29689573 tggttggttctcgcgttttgggcaaaacctgcacgggttggtgtgattcgactcaaatctgcacattttcagcttccgagtgtgtgggttatgtcggatg 29689474  T
Q  232 gcagctccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgcta 331  Q
    || |||| |||||||| || ||||| |||||||| ||| |||||  | |||||||||||||||| |||| ||| |||||||||||| |||| ||||||||    
T  29689473 gcggctctatttgacggaggattcaaattgatagactaaaaatgaccgtacaaacttgttgtctagtgtgtcagtgagtggttggtaggtggattcgcta 29689374  T
Q  332 ccgtgttggcggtcaaattcattgccattggtaaaagtttggagttcatacttgtgc 388  Q
    ||||||||||||||   |||||||||||||||  ||| |||||| ||| ||||||||    
T  29689373 ccgtgttggcggtc-ggttcattgccattggt-gaaggttggagctcagacttgtgc 29689319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 507
Target Start/End: Original strand, 27020261 - 27020342
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactcccca 507  Q
    |||||| | |||||||| ||||||||| ||| ||||||||| |||  |||||||||||||||||||||||||| ||||||||    
T  27020261 aatttgatgttgatcatagcagtaaacagttagtgcatgtgaatttgttaattaccgtgttggcggttgaatctactcccca 27020342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 36316211 - 36316300
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| |||||||||| |||||    
T  36316211 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaattttttaattaccgtgttggcggttgaatctactccccactctcaag 36316300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 36330420 - 36330509
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| |||||||||| |||||    
T  36330420 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaattttttaattaccgtgttggcggttgaatctactccccactctcaag 36330509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 34806368 - 34806279
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  ||||||||||||||||||||||||||  ||||||||| |||||    
T  34806368 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctgctccccactctcaag 34806279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 39296000 - 39295911
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  ||||||||||||||||| |||||||| |||||||||| |||||    
T  39296000 aatttgatgttgatcatagcagtaaacagttagtgtgtgtggatttgttaattaccgtgttggctgttgaatctactccccactctcaag 39295911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 5948268 - 5948179
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| ||| |||||| |||||    
T  5948268 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccactctcaag 5948179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 509
Target Start/End: Original strand, 53095208 - 53095276
Alignment:
Q  441 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccact 509  Q
    ||||||||||| ||||||||||||| ||||| | | |||||||||||| ||||| |||||||| |||||    
T  53095208 atcgcagtaaatggttggtgcatgtagattcgtcatttaccgtgttggtggttggatccactctccact 53095276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 518
Target Start/End: Original strand, 33287453 - 33287536
Alignment:
Q  435 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcat 518  Q
    ||||||| ||||||||||   ||||||| |||||||  ||| ||||||||||||||||  |||||| |||||| ||||||||||    
T  33287453 ttgatcaccgcagtaaacaagtggtgcacgtggatttgttatttaccgtgttggcggtcaaatccagtccccaatttcaagcat 33287536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 522
Target Start/End: Complemental strand, 37011198 - 37011111
Alignment:
Q  435 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgt 522  Q
    |||||||||| ||||||| ||||||||| |||||||   ||||||  |||||  ||||  ||| ||||||||||||||||||||||||    
T  37011198 ttgatcatcgtagtaaacagttggtgcaggtggatttgctaattattgtgttaacggtcaaattcactccccactttcaagcatctgt 37011111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 1206544 - 1206612
Alignment:
Q  454 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtc 523  Q
    ||||||||| ||| |||| |||||||||||||||||||| |||| ||| ||||| |||||| ||| ||||    
T  1206544 gttggtgcacgtgaattcgttaattaccgtgttggcggtcgaattcac-ccccattttcaaacatttgtc 1206612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 511
Target Start/End: Complemental strand, 34446771 - 34446702
Alignment:
Q  442 tcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccacttt 511  Q
    ||||||||||| |||||||   |||||||| ||| |||||||||||||||| | ||||||| ||| ||||    
T  34446771 tcgcagtaaacagttggtgatcgtggattctttagttaccgtgttggcggtcggatccacttcccgcttt 34446702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 520
Target Start/End: Original strand, 32107443 - 32107525
Alignment:
Q  441 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcg---gttgaatccactccccactttcaagcatct 520  Q
    |||||| |||| |||||||||  |||||||  ||| ||||||||||||||    ||| |||||||||||||||||||| ||||    
T  32107443 atcgcaataaatggttggtgcgagtggatttgttatttaccgtgttggcgattattggatccactccccactttcaagaatct 32107525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 165 - 427
Target Start/End: Original strand, 3730155 - 3730416
Alignment:
Q  165 cacgggttggtgtgattcaaatcagttccgcactttcgggttctaaatgtgtgggttctgtcagatggcagctccatttgacgaagtattcagattgata 264  Q
    ||||||||||||||| || | |||| ||  |||||||| ||||  |  ||||| ||| ||||| ||| ||| || |||||| | || |||  ||||||||    
T  3730155 cacgggttggtgtgactcgactcagatcttcactttcgtgttccgagcgtgtgagttatgtcaaatgacagttctatttgagggaggattttgattgata 3730254  T
Q  265 ggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtgttggcggtcaaattcattgccattggta 364  Q
     ||||||||| ||| ||||||||||||||||||||||||| | ||||||||||||||  ||||| ||||||||| ||||||  ||||||||||||||||     
T  3730255 tgctagaaattgtcgtacaaacttgttgtcttgtgtctcagttagtggttggtgggtagattcgataccgtgtttgcggtcggattcattgccattggt- 3730353  T
Q  365 aaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggcttgttgtgggccagaa 427  Q
    |||| ||| |||||  ||||| |||||||| ||||||| ||||| ||||||||| ||||||||    
T  3730354 aaaggttgtagttcggacttgagcctaggtagtgcttgtatgatcgcttgttgttggccagaa 3730416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 426 - 523
Target Start/End: Original strand, 18464711 - 18464808
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtc 523  Q
    |||||||  |||||||||||||||||| | ||||||  |||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||    
T  18464711 aatttgccgttgatcatcgcagtaaacaggtggtgcgcgtggattcgttatttaccgtgtcggcggtcgaatccactccccactttcaagcatctgtc 18464808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 426 - 527
Target Start/End: Complemental strand, 31441882 - 31441781
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctg 525  Q
    |||||||| ||||| ||||||||||||| | ||||| ||||||||  ||||| || ||||||||||||||||||||||||||||  |||| |||||||||    
T  31441882 aatttgctgttgatgatcgcagtaaacgataggtgcgtgtggatttgttaatgactgtgttggcggttgaatccactccccactagcaagaatctgtctg 31441783  T
Q  526 tg 527  Q
    ||    
T  31441782 tg 31441781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 360
Target Start/End: Complemental strand, 11756579 - 11756441
Alignment:
Q  218 ggttctgtcagatggcagctccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggt 317  Q
    ||||||||| | |||||||| || |  ||||||  || ||||| ||||||||||||||| | || ||||||||||| ||    |||| ||||||||||||    
T  11756579 ggttctgtcggttggcagcttcagtcaacgaaggtttaagattaataggctagaaatggccgtataaacttgttgtttt----ctcagtgagtggttggt 11756484  T
Q  318 gggtgtattcgctaccgtgttggcggtcaaattcattgccatt 360  Q
     |||| || |||||||||||||||||||| | | |||||||||    
T  11756483 tggtggatccgctaccgtgttggcggtcagactgattgccatt 11756441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 12498713 - 12498802
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  12498713 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctactcctcactctcaag 12498802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 18381357 - 18381446
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  18381357 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 18381446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 39617899 - 39617988
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  39617899 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccactctcaag 39617988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 453 - 508
Target Start/End: Original strand, 22935494 - 22935548
Alignment:
Q  453 ggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccac 508  Q
    |||||||| |||||||||| |||| ||||||||||||||| |||||||||||||||    
T  22935494 ggttggtg-atgtggattcgttaactaccgtgttggcggtcgaatccactccccac 22935548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 6420989 - 6420900
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| |||  ||||| |||||    
T  6420989 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctactttccactctcaag 6420900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 15988124 - 15988073
Alignment:
Q  463 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaa 514  Q
    |||||||||  ||||||||||||||||||| |||| ||||||||||| ||||    
T  15988124 tgtggattctctaattaccgtgttggcggtcgaattcactccccactctcaa 15988073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 237 - 377
Target Start/End: Complemental strand, 12111773 - 12111633
Alignment:
Q  237 tccatttgacgaagtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtg 336  Q
    ||||||||||| || | | ||||||||||||||||||||| | |  ||||||| ||| ||||||||||  ||||| ||||| |||| ||||||||| |||    
T  12111773 tccatttgacggaggagtaagattgataggctagaaatggccgtttaaacttgatgttttgtgtctcagcgagtgattggttggtggattcgctacggtg 12111674  T
Q  337 ttggcggtcaaattcattgccattggtaaaagtttggagtt 377  Q
    ||||| |||| ||| ||| ||||| ||||||| ||||||||    
T  12111673 ttggcagtcagatttattaccatttgtaaaaggttggagtt 12111633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 426 - 509
Target Start/End: Original strand, 4647944 - 4648027
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccact 509  Q
    |||||| | |||||||| ||||||||| ||| |||||||||||||  |||||||||||||||||||||||||| ||||||||||    
T  4647944 aatttgatgttgatcatagcagtaaacagttagtgcatgtggatttgttaattaccgtgttggcggttgaatctactccccact 4648027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 426 - 527
Target Start/End: Complemental strand, 19622658 - 19622557
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctg 525  Q
    |||||||||| ||||||||||| ||  ||||||||  ||||||||| |||||||||||||||| |||  ||||||||||||||| ||||| |||||| ||    
T  19622658 aatttgctatagatcatcgcagcaactggttggtgtgtgtggattcgttaattaccgtgttggtggtcaaatccactccccactctcaagaatctgtttg 19622559  T
Q  526 tg 527  Q
    ||    
T  19622558 tg 19622557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 453 - 515
Target Start/End: Complemental strand, 30960919 - 30960858
Alignment:
Q  453 ggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||||| |||||||||| |||||||||||||||||||| |||||| ||||||||| |||||    
T  30960919 ggttggtg-atgtggattcgttaattaccgtgttggcggtcgaatccgctccccactctcaag 30960858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 515
Target Start/End: Original strand, 7647590 - 7647651
Alignment:
Q  453 ggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||||| |||||||||| |||| ||||||||||||||| |||| ||||||||||| |||||    
T  7647590 ggttggtg-atgtggattcgttaactaccgtgttggcggtcgaatgcactccccactctcaag 7647651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 514
Target Start/End: Complemental strand, 17419161 - 17419091
Alignment:
Q  444 gcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaa 514  Q
    ||||||||  |||||||| |||||||||  ||||||||||||||||||| |||| ||||| ||||| ||||    
T  17419161 gcagtaaattgttggtgcgtgtggattcgctaattaccgtgttggcggtcgaattcactcgccactctcaa 17419091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 40267894 - 40267805
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| |||||||||  || |||| |||| |||  ||||||||||||||||||||| |||| ||||| |||| |||||    
T  40267894 aatttgatgttgatcatagcagtaaacaattagtgcgtgtgaatttgttaattaccgtgttggcggtttaatctactcctcactctcaag 40267805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 40835122 - 40835033
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||||||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  40835122 aatttgatgttgatcatagcagtaaactgttagtgcatgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 40835033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 426 - 509
Target Start/End: Original strand, 1594553 - 1594636
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccact 509  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| ||||| ||||    
T  1594553 aatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccacact 1594636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 5808339 - 5808428
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  5808339 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccactctcaag 5808428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 16485027 - 16484938
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  16485027 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 16484938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 39004963 - 39004874
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| || |||||| ||| |||| ||||||||  ||||||||||||||| |||||||||| |||||||||| |||||    
T  39004963 aatttgatgttgatcatagctgtaaacagttagtgcgtgtggatttgttaattaccgtgttgacggttgaatctactccccactctcaag 39004874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 39560908 - 39560997
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| | ||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  39560908 aatttgatgttgatcatagcagtaaactgttagtgcgtatggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 39560997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 462 - 515
Target Start/End: Original strand, 641016 - 641069
Alignment:
Q  462 atgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||||||| |||| ||||||||||||||| |||||||||||||||| |||||    
T  641016 atgtggattcgttaactaccgtgttggcggtcgaatccactccccactctcaag 641069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 16482578 - 16482489
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| ||| |||||| |||||    
T  16482578 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccactctcaag 16482489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 3335962 - 3336051
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| |||||||||| |||||    
T  3335962 aatttgatgttgatcatagcagtaaacagttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccccactctcaag 3336051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 441 - 514
Target Start/End: Original strand, 25899153 - 25899226
Alignment:
Q  441 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaa 514  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||| ||||| ||||    
T  25899153 atcgcactaaacggttggtgcatgtggtttcattaattaccgtgttggcggtcgaatctactctccactctcaa 25899226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 33951682 - 33951771
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| |||||||||| |||||    
T  33951682 aatttgatgttgatcatagcagtaaacagttagtgcgtgtggattttttaattaccgtgttggcggttgaatctactccccactctcaag 33951771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 435 - 515
Target Start/End: Original strand, 47330053 - 47330133
Alignment:
Q  435 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| |||||||||| |||||    
T  47330053 ttgatcatagcagtaaacagttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccccactctcaag 47330133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 22402487 - 22402398
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  22402487 aatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 22402398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 37969257 - 37969168
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  37969257 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 37969168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 438 - 515
Target Start/End: Original strand, 4062400 - 4062477
Alignment:
Q  438 atcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    ||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  4062400 atcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 4062477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 515
Target Start/End: Original strand, 4545679 - 4545776
Alignment:
Q  418 tgggccagaatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||||||| | ||| ||||||||||||||||| |||||||   ||| |||||  || ||||| |||||||||| ||||||| |||||||| |||||    
T  4545679 tgggccagaaatggctgttgatcatcgcagtaaatggttggtatgtgttgattcgctatttaccatgttggcggtcgaatccaatccccactctcaag 4545776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 28414066 - 28414155
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||| ||||||||||||||||| ||||| |||| |||||    
T  28414066 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattactgtgttggcggttgaatctactccacactctcaag 28414155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 503
Target Start/End: Complemental strand, 23687750 - 23687689
Alignment:
Q  441 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactc 503  Q
    ||||||||||| ||||||||||||| ||||||| |||||| |||||| |||| ||||||||||    
T  23687750 atcgcagtaaatggttggtgcatgt-gattcatcaattactgtgttgccggtcgaatccactc 23687689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 503
Target Start/End: Complemental strand, 24059987 - 24059926
Alignment:
Q  441 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactc 503  Q
    ||||||||||| ||||||||||||| ||||||| |||||| |||||| |||| ||||||||||    
T  24059987 atcgcagtaaatggttggtgcatgt-gattcatcaattactgtgttgccggtcgaatccactc 24059926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 527
Target Start/End: Original strand, 46028310 - 46028382
Alignment:
Q  454 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtg 527  Q
    |||||||| |||| |||| |||||||| ||||||||||| |||||||| ||| | |||||||||| ||||||||    
T  46028310 gttggtgcttgtgaattcgttaattacagtgttggcggtcgaatccac-ccctattttcaagcatttgtctgtg 46028382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 518
Target Start/End: Complemental strand, 587374 - 587312
Alignment:
Q  454 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcat 518  Q
    ||||||||| ||||||||| |||||||||||||||| || |||| ||  ||||| ||||||||||    
T  587374 gttggtgcacgtggattcactaattaccgtgttggccgtcgaattca--ccccattttcaagcat 587312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 2844037 - 2843948
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| ||||||||| |||  |||||||||||||||||||||||||| |||||||||| |||||    
T  2844037 aatttgatgttgatcatagcagtaaactgttagtgcatgtgaatttgttaattaccgtgttggcggttgaatctactccccactctcaag 2843948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 38981055 - 38981144
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||||||||||||  ||||||| |||||||||||||||||| |||||||||| |||||    
T  38981055 aatttgatgttgatcatagcagtaaacagttagtgcatgtggatttgttaattaacgtgttggcggttgaatctactccccactctcaag 38981144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 2027907 - 2027818
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| | ||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  2027907 aatttgatgttgatcatagtagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 2027818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 18414616 - 18414527
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  18414616 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 18414527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 28641572 - 28641661
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  28641572 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccactctcaag 28641661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 32519751 - 32519840
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  32519751 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 32519840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 45541546 - 45541457
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  45541546 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 45541457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 49008252 - 49008163
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  ||||||||||| |||||||||||||| ||||| |||| |||||    
T  49008252 aatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtattggcggttgaatctactccacactctcaag 49008163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 515
Target Start/End: Complemental strand, 8110773 - 8110684
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||   || |||| |||| |||  |||||||||||||||||||||||||| |||||||||| |||||    
T  8110773 aatttgatgttgatcatagcagtaaatatttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctactccccactctcaag 8110684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 454 - 527
Target Start/End: Original strand, 32829231 - 32829303
Alignment:
Q  454 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtg 527  Q
    ||||||||  ||| |||| |||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||    
T  32829231 gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaatccac-ccccattttcaagcatttgtctgtg 32829303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 515
Target Start/End: Complemental strand, 24779932 - 24779852
Alignment:
Q  435 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||||| | ||||||| ||| |||| | ||||||  |||||||||||||| ||||||||||| |||||||||| |||||    
T  24779932 ttgatcatagaagtaaacagttagtgcgtctggatttgttaattaccgtgttagcggttgaatctactccccactctcaag 24779852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 527
Target Start/End: Original strand, 5965116 - 5965188
Alignment:
Q  454 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtg 527  Q
    ||||||||  ||| |||| |||||||||||||||||||| |||| ||| ||||| |||||||||| ||||||||    
T  5965116 gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaattcac-ccccattttcaagcatttgtctgtg 5965188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 526
Target Start/End: Complemental strand, 15853407 - 15853336
Alignment:
Q  454 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgt 526  Q
    ||||||||  ||| |||| |||||||||||||||||||| |||||||| ||| | |||||||||| |||||||    
T  15853407 gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaatccac-ccctattttcaagcatttgtctgt 15853336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 527
Target Start/End: Complemental strand, 36085848 - 36085789
Alignment:
Q  468 attcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtg 527  Q
    |||| ||| ||||||| ||| |||| |||| |||||| ||||||||||||||||||||||    
T  36085848 attcgttatttaccgtattgacggtcgaattcactccacactttcaagcatctgtctgtg 36085789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 194654 - 194743
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  194654 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 194743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 515
Target Start/End: Original strand, 4038 - 4127
Alignment:
Q  426 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 515  Q
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T  4038 aatttgatgttgatcatagaaataaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatcttctctccactctcaag 4127  T

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