View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11865_high_8 (Length: 402)
Name: NF11865_high_8
Description: NF11865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11865_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 2969744 - 2969365
Alignment:
| Q |
1 |
aaaagactaagtatggttgcggtaagtaaacaaatattaatgacttaattgcatagctaagtaaacatatatcatcttttccttacatatgacattcatg |
100 |
Q |
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| T |
2969744 |
aaaagactaagtatggttgcggtaagtaaacaaatattaatgacttaattgcatagctaagtaaacatatatcatcttttccttacatataacattcatg |
2969645 |
T |
|
| Q |
101 |
atcaacaaagcatgacccgacttttaagtattacatttccgtgatcacaacaggttgttaatgctttgacggacatatcggaaggcaacacatgtgacat |
200 |
Q |
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| T |
2969644 |
atcaacaaagcatgaccggatttttaagtattacttttccgtgatcacaacaggttgttaatgctttgacggacatatcggaaggcaacacatgtgacat |
2969545 |
T |
|
| Q |
201 |
tggaacaggagattactccccagcaagatcagattcatcctatagtgaatcagaatttgatgaaaatgaagatgagaatggaccctttgagcaaggtgaa |
300 |
Q |
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| T |
2969544 |
tggaacaggagattactccccagcaagatcagattcatcctatagtgaatcagaatttgatgaaaat---gatgagaatgaaccctttgagcaaggtgaa |
2969448 |
T |
|
| Q |
301 |
ttactgagcactatatcagaatctacagaaagcaatgaatacataagtcagatgaggcatatgactgtgaggcagccaccatc |
383 |
Q |
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| T |
2969447 |
ttactaagaactatttcagaatccacagaaagcaatgaatacataagtcagatgaggcatatgactgtgaggcagccaccatc |
2969365 |
T |
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