View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11865_high_9 (Length: 402)
Name: NF11865_high_9
Description: NF11865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11865_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 6 - 375
Target Start/End: Complemental strand, 35707557 - 35707200
Alignment:
| Q |
6 |
ataatgtaatgttcctatcaactgagttttgctcacataaattattaccacatttatttattccttaaaaaagtcnnnnnnnnnnnn-------cattct |
98 |
Q |
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| T |
35707557 |
ataatgtaatgttcctatcaactgagttttgctcacgtaaattattaccacatttatttattccttaaaaaagtctttttttttttttttttttcattct |
35707458 |
T |
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| Q |
99 |
cgtaaatacaaattcaacatagtataatataaatttcaagaactgctnnnnnnnnnnnnnnnnnnnnctcaagaaaacctgaaaccgcgccatagtgaca |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
35707457 |
cgtaaatacaaattcaacatagtataatataaatttcaagaactgctaaaaaatatatataaaaaaactcaagaaaacctgaaaccgcgccatagtgtca |
35707358 |
T |
|
| Q |
199 |
agctagcaatattccagagaaattcggtgggatatttcgtcttctctataggtgtggtgcggcttgattggttctatttccttagattccgaaaatcatt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
35707357 |
agctagcaatattccagagaaattcggtgggatatttcgtcttctctataggtgtggcgcggcttgattggttttatttccttagattccgaaaattatt |
35707258 |
T |
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| Q |
299 |
tttatcaaaataagaatagaaaatacaagtaatatattgtgtttatgaggttaattttcatgcacggttgatttaaa |
375 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35707257 |
ttt-------------------atacaagtaatatattgtgtttatgaggttaattttcatgcacggttgatttaaa |
35707200 |
T |
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