View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11865_low_1 (Length: 800)

Name: NF11865_low_1
Description: NF11865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11865_low_1
NF11865_low_1
[»] chr4 (22 HSPs)
chr4 (30-785)||(50249337-50250097)
chr4 (474-658)||(37826021-37826203)
chr4 (436-505)||(48734359-48734428)
chr4 (550-640)||(48146945-48147034)
chr4 (271-348)||(50661903-50661980)
chr4 (550-640)||(48170195-48170284)
chr4 (436-504)||(48865055-48865121)
chr4 (259-340)||(50680335-50680416)
chr4 (549-615)||(7793664-7793730)
chr4 (484-542)||(7801490-7801548)
chr4 (436-505)||(48853665-48853735)
chr4 (551-638)||(45371174-45371260)
chr4 (549-611)||(7816825-7816887)
chr4 (431-505)||(45370972-45371046)
chr4 (508-640)||(7766475-7766602)
chr4 (549-640)||(7790915-7791007)
chr4 (504-575)||(7772880-7772946)
chr4 (597-640)||(48864853-48864896)
chr4 (488-542)||(7814330-7814384)
chr4 (488-542)||(7823822-7823876)
chr4 (436-470)||(50681946-50681980)
chr4 (436-477)||(7879391-7879432)
[»] chr7 (1 HSPs)
chr7 (436-506)||(48884917-48884987)
[»] chr1 (1 HSPs)
chr1 (601-651)||(24367923-24367973)
[»] chr8 (2 HSPs)
chr8 (607-640)||(12201168-12201201)
chr8 (607-640)||(12445596-12445629)


Alignment Details
Target: chr4 (Bit Score: 660; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 30 - 785
Target Start/End: Original strand, 50249337 - 50250097
Alignment:
Q  30 aaagtgatttaaatgttagaaaaaatacaaaattatggttgactacaaaataggcaaaaggaagtagaaaactgagtttacccgagaactattttctcta 129  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50249337 aaagtgatttaaatgttagaaaaaataaaaaattatggttgactacaaaataggcaaaaggaagtagaaaactgagtttacccgagaactattttctcta 50249436  T
Q  130 cacggaagttgaaacatcaaatcctaacatgagttgaaatcttgagaacatcaaatatatcgaatgataaacaaaatcaattttatatttataaactaac 229  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50249437 cacggaagtggaaacatcaaatcctaacatgagttgaaatcttgagaacatcaaatatatcgaatgataaacaaaatcaattttatatttataaactaac 50249536  T
Q  230 attcacttttcacaagaattgaaaactgtaaacatagaaaacaaataaaacatatgaactcaagtccgaactctcctagcatgtttggtactgaccaaac 329  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  50249537 attcacttttcacaagaattggaaactgtaaacatagaaaacaaataaaacatatgaactcaagtccgtactctcctagcatgcttggtactgaccaaac 50249636  T
Q  330 tggtgctaataattctgaaaagaaatcctatctagactgaatataaagagagtaaagaacatagagagcagaactgaataattttgaaattagnnnnnnn 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  50249637 tggtgctaataattctgaaaagaaatcctatctagactgaatataaagagagtaaagaacatagagagcagaactgaataattttgaaattagttttttt 50249736  T
Q  430 ncttttctggtttgaaacagataaatggcaagggccaaag-ttaatagagtccgctgaaattagagaacaaaacctttttccttcaatatgcataaactc 528  Q
      ||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50249737 --tttcctggtttgaaacagataaatggcaagggccaaagtttaatagagtccactgaaattagagaacaaaacctttttccttcaatatgcataaactc 50249834  T
Q  529 atcagattaatttattttatcatataaaacaatttcagacagtgacaacaacatatatttataactctatccagttacacatgcataaataacagtgaat 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  50249835 atcagattaatttattttatcatataaaacaatttcagacagtgacaacaacatatatttagaactctatccagttacaaatgcataaataacagtgaat 50249934  T
Q  629 cgcacaaacaaaactgtcgatatctgtaattctgctaattcttatctagtagtgtgtgtg------ttgtttttgttagctttattcattgaatagtatc 722  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||| ||||||||||||||||||||||||||    
T  50249935 cgcacaaacaaaactgtcgatatctgtaattctgctaattcttatctagtagtgtgtgtgtgtgtattgttttggttagctttattcattgaatagtatc 50250034  T
Q  723 aagacttccagttttgttaaattattccacagctcatgttacaaatgcagtcaaacacatatt 785  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50250035 aagacttccagttttgttaaattattccacagctcatgttacaaatgcagtcaaacacatatt 50250097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 474 - 658
Target Start/End: Original strand, 37826021 - 37826203
Alignment:
Q  474 tagagtccgctgaaattagagaacaaaacctt---tttccttcaatatgcataaactcatcagattaatttattttatcatataaaacaatttcagacag 570  Q
    |||||||| |||||||||||||||||||||||   ||||||||||||||||||| ||||||| |||||||||      |||||||||| |||||||||||    
T  37826021 tagagtccactgaaattagagaacaaaaccttatttttccttcaatatgcataacctcatcaaattaatttac-----catataaaaccatttcagacag 37826115  T
Q  571 tgacaacaacatatatttataactctatccagttacacatgcataaataacagtgaatcgcacaaacaaaactgtcgatatctgtaat 658  Q
    |||||| |||||| | ||| ||||| ||||| ||||| |||||||||||||| |||| | || || |||||||||| |||| ||||||    
T  37826116 tgacaaaaacatacaattagaactcaatccaattacatatgcataaataacaatgaaacacataatcaaaactgtcaatatttgtaat 37826203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 436 - 505
Target Start/End: Original strand, 48734359 - 48734428
Alignment:
Q  436 ctggtttgaaacagataaatggcaagggccaaagttaatagagtccgctgaaattagagaacaaaacctt 505  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||    
T  48734359 ctggtttgaaacagagaaatggcaagggctaaagttaatagagtccgctaaaattagagaagaaaacctt 48734428  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 550 - 640
Target Start/End: Original strand, 48146945 - 48147034
Alignment:
Q  550 atataaaacaatttcagacagtgacaacaacatatatttataactctatccagttacacatgcataaataacagtgaatcgcacaaacaaa 640  Q
    ||||| ||||||||||| ||||||| |||||||| ||| | ||||| |||||||||||||||||||||||||| |||||| | ||||||||    
T  48146945 atatagaacaatttcaggcagtgaccacaacatacatt-agaactcaatccagttacacatgcataaataacactgaatcacgcaaacaaa 48147034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 50661980 - 50661903
Alignment:
Q  271 caaataaaacatatgaactcaagtccgaactctcctagcatgtttggtactgaccaaactggtgctaataattctgaa 348  Q
    ||||||||||||||||||| ||||| |||||||| ||||||||| |||||| ||| ||||  ||||||||||||||||    
T  50661980 caaataaaacatatgaactaaagtctgaactctcttagcatgttgggtactaaccgaactcatgctaataattctgaa 50661903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 550 - 640
Target Start/End: Original strand, 48170195 - 48170284
Alignment:
Q  550 atataaaacaatttcagacagtgacaacaacatatatttataactctatccagttacacatgcataaataacagtgaatcgcacaaacaaa 640  Q
    |||||| ||||||||   ||||||| |||||||| ||| |  |||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  48170195 atataatacaatttctagcagtgaccacaacatacatt-agcactcaatccagttacacatgcataaataacagtgaatcacacaaacaaa 48170284  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 436 - 504
Target Start/End: Complemental strand, 48865121 - 48865055
Alignment:
Q  436 ctggtttgaaacagataaatggcaagggccaaagttaatagagtccgctgaaattagagaacaaaacct 504  Q
    |||||||||||||||  |||||||| ||||| || |||| |||||||||||||||||||||||||||||    
T  48865121 ctggtttgaaacaga--aatggcaatggccatagataatggagtccgctgaaattagagaacaaaacct 48865055  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 50680416 - 50680335
Alignment:
Q  259 aaacatagaaaacaaataaaacatatgaactcaagtccgaactctcctagcatgtttggtactgaccaaactggtgctaata 340  Q
    |||||||| || ||||||||||||||||||  |||||||| ||||| ||||||||| |||||||||| ||||| || |||||    
T  50680416 aaacatagtaaccaaataaaacatatgaacgaaagtccgagctctcttagcatgttgggtactgaccgaactgatggtaata 50680335  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 549 - 615
Target Start/End: Original strand, 7793664 - 7793730
Alignment:
Q  549 catataaaacaatttcagacagtgacaacaacatatatttataactctatccagttacacatgcata 615  Q
    |||||||||||||||||  |||||||||||||||  ||||| || || |||||||||||||||||||    
T  7793664 catataaaacaatttcaagcagtgacaacaacatgcatttagaattcaatccagttacacatgcata 7793730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 484 - 542
Target Start/End: Complemental strand, 7801548 - 7801490
Alignment:
Q  484 tgaaattagagaacaaaacctttttccttcaatatgcataaactcatcagattaattta 542  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| || |||||| ||||    
T  7801548 tgaaattagagaacaaaacctttctccttcaacatgcataaactaattagattatttta 7801490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 505
Target Start/End: Complemental strand, 48853735 - 48853665
Alignment:
Q  436 ctggtttgaaa-cagataaatggcaagggccaaagttaatagagtccgctgaaattagagaacaaaacctt 505  Q
    ||||||||||| |||| ||||||||||||||||| |||||||  ||| || ||||||||||||||||||||    
T  48853735 ctggtttgaaaacagagaaatggcaagggccaaacttaatagtttccactaaaattagagaacaaaacctt 48853665  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 551 - 638
Target Start/End: Original strand, 45371174 - 45371260
Alignment:
Q  551 tataaaacaatttcagacagtgacaacaacatatatttataactctatccagttacacatgcataaataacagtgaatcgcacaaaca 638  Q
    ||||||||||||||  |||||||  |||||||| ||| | ||||| |||||  ||||||||||||||||| |||||||| ||||||||    
T  45371174 tataaaacaatttctaacagtgatcacaacatacatt-agaactcaatccaactacacatgcataaataaaagtgaatcacacaaaca 45371260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 611
Target Start/End: Original strand, 7816825 - 7816887
Alignment:
Q  549 catataaaacaatttcagacagtgacaacaacatatatttataactctatccagttacacatg 611  Q
    |||||||||||||||||  |||||||||||||||  ||||| || || |||||||||||||||    
T  7816825 catataaaacaatttcaagcagtgacaacaacatgcatttagaattcaatccagttacacatg 7816887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 431 - 505
Target Start/End: Original strand, 45370972 - 45371046
Alignment:
Q  431 cttttctggtttgaaacagataaatggcaagggccaaagttaatagagtccgctgaaattagagaacaaaacctt 505  Q
    |||| |||||||||||  || | ||||||||||  |||||||||||||||| || || |||||||||||||||||    
T  45370972 ctttcctggtttgaaattgagagatggcaagggataaagttaatagagtccactaaatttagagaacaaaacctt 45371046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 508 - 640
Target Start/End: Complemental strand, 7766602 - 7766475
Alignment:
Q  508 tccttcaatatgcataaactcatcagattaatttattttatcatataaaacaatttcagacagtgacaacaacatatatttataactctatccagttaca 607  Q
    |||||||| |||||||||||||  |||||||||||      || || |||||||||||   |||||||| |||||| ||||| ||  | |||||||||||    
T  7766602 tccttcaacatgcataaactcaaaagattaatttac-----cacatgaaacaatttcaagtagtgacaataacataaatttagaatgcaatccagttaca 7766508  T
Q  608 catgcataaataacagtgaatcgcacaaacaaa 640  Q
    |||||||||| |||| |||| |  |||||||||    
T  7766507 catgcataaacaacattgaagcatacaaacaaa 7766475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 549 - 640
Target Start/End: Complemental strand, 7791007 - 7790915
Alignment:
Q  549 catataaaacaatttcagacagtgacaacaacatatatttataactcta-tccagttacacatgcataaataacagtgaatcgcacaaacaaa 640  Q
    |||||||| ||||||||  || ||||| || |||| ||||| ||| | | |||||||||| |||||||||||||||||| || ||||||||||    
T  7791007 catataaatcaatttcaagcaatgacatcagcatacatttaaaacgcaaatccagttacagatgcataaataacagtgagtcacacaaacaaa 7790915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 575
Target Start/End: Original strand, 7772880 - 7772946
Alignment:
Q  504 tttttccttcaatatgcataaactcatcagattaatttattttatcatataaaacaatttcagacagtgaca 575  Q
    |||||||||||| ||| ||||||||||||||||||||||      |||||||||||||||||  ||||||||    
T  7772880 tttttccttcaacatgtataaactcatcagattaatttac-----catataaaacaatttcaagcagtgaca 7772946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 640
Target Start/End: Complemental strand, 48864896 - 48864853
Alignment:
Q  597 atccagttacacatgcataaataacagtgaatcgcacaaacaaa 640  Q
    |||||||||||||||||||||||||| ||| || ||||||||||    
T  48864896 atccagttacacatgcataaataacaatgattcacacaaacaaa 48864853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 542
Target Start/End: Complemental strand, 7814384 - 7814330
Alignment:
Q  488 attagagaacaaaacctttttccttcaatatgcataaactcatcagattaattta 542  Q
    ||||||||||||||||||| ||||| || ||||||||||| || |||||| ||||    
T  7814384 attagagaacaaaacctttctccttgaacatgcataaactaattagattatttta 7814330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 542
Target Start/End: Complemental strand, 7823876 - 7823822
Alignment:
Q  488 attagagaacaaaacctttttccttcaatatgcataaactcatcagattaattta 542  Q
    ||||||||||||||||||| ||||| || ||||||||||| || |||||| ||||    
T  7823876 attagagaacaaaacctttctccttgaacatgcataaactaattagattatttta 7823822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 436 - 470
Target Start/End: Complemental strand, 50681980 - 50681946
Alignment:
Q  436 ctggtttgaaacagataaatggcaagggccaaagt 470  Q
    ||||||||||||||| |||||||||||||||||||    
T  50681980 ctggtttgaaacagagaaatggcaagggccaaagt 50681946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 477
Target Start/End: Complemental strand, 7879432 - 7879391
Alignment:
Q  436 ctggtttgaaacagataaatggcaagggccaaagttaataga 477  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||    
T  7879432 ctggtttgaaacagagaaatgacaagggccaaagttagtaga 7879391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 436 - 506
Target Start/End: Complemental strand, 48884987 - 48884917
Alignment:
Q  436 ctggtttgaaacagataaatggcaagggccaaagttaatagagtccgctgaaattagagaacaaaaccttt 506  Q
    |||||||||||||   ||||| ||||||||| ||||||||||||||  ||||||||||||||||| |||||    
T  48884987 ctggtttgaaacaatgaaatgacaagggccagagttaatagagtccattgaaattagagaacaaagccttt 48884917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 601 - 651
Target Start/End: Complemental strand, 24367973 - 24367923
Alignment:
Q  601 agttacacatgcataaataacagtgaatcgcacaaacaaaactgtcgatat 651  Q
    |||||||||||||||||||| |||||||||| |||||||| ||||| ||||    
T  24367973 agttacacatgcataaataatagtgaatcgcccaaacaaagctgtcaatat 24367923  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 640
Target Start/End: Complemental strand, 12201201 - 12201168
Alignment:
Q  607 acatgcataaataacagtgaatcgcacaaacaaa 640  Q
    ||||||||||||||||||||||| ||||||||||    
T  12201201 acatgcataaataacagtgaatcacacaaacaaa 12201168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 607 - 640
Target Start/End: Complemental strand, 12445629 - 12445596
Alignment:
Q  607 acatgcataaataacagtgaatcgcacaaacaaa 640  Q
    ||||||||||||||||||||||| ||||||||||    
T  12445629 acatgcataaataacagtgaatcacacaaacaaa 12445596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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