View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11865_low_12 (Length: 337)
Name: NF11865_low_12
Description: NF11865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11865_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 22 - 320
Target Start/End: Original strand, 35899096 - 35899397
Alignment:
| Q |
22 |
agagaaatcctgacacaataaatttgaagggtcctcctgctttgaatgtcttggcagcacagtgacaagagcaggtgcatggatgtttttcttcactctt |
121 |
Q |
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| T |
35899096 |
agagaaatcctgacacaataaatttgaagggtcctcctgctttgaatgtcttggcagcacagtgacaagagcaggtgcatggatgtttttcttcactctt |
35899195 |
T |
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| Q |
122 |
aggttccttcttctgaatctgagccatcatatatattcaaaaggaaaactgcaagctgctgcaaaaagtagggatacactaaatgcacctgaaaaagaaa |
221 |
Q |
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| T |
35899196 |
aggttccttcttctgaatctgagccatc--atatattcaaaaggaaaactgcaagctgctgcaaaaagtagagatacactaaatgcacctgaaaaagaaa |
35899293 |
T |
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| Q |
222 |
ttcaattaagtg-----ctgaattctataagcttatcaaatatctagaatcacaacttggaatacaaataaactgaaacaaaaagcacaggacaaagttc |
316 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35899294 |
ttcaattaagtgttgatatgaattctataagcttatcaaatatctagaatcacaacttggaatacaaataaattgaaacaaaaagcacaggacaaagttc |
35899393 |
T |
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| Q |
317 |
aaga |
320 |
Q |
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|||| |
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| T |
35899394 |
aaga |
35899397 |
T |
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