View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11865_low_13 (Length: 321)
Name: NF11865_low_13
Description: NF11865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11865_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 4 - 268
Target Start/End: Complemental strand, 11120911 - 11120635
Alignment:
| Q |
4 |
atcgatcgccaacaccacacttgcagaaacatatatcaagtctttgtgctgcaaagtctttcactatgctgaaaaggaagaaaaattatgaaaacaaata |
103 |
Q |
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| T |
11120911 |
atcgatcgccaacaccacacttgcagaaacatatatcaagtctttgtgctgcaaagtctttcactatgctgaaaaggaagaaaaattatgaaaacaaata |
11120812 |
T |
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| Q |
104 |
ttgtccccaaataataataatataatggttttttcacaataactatagatattaaaa---------------gtgtgagatagaagcctctcattaaatg |
188 |
Q |
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| T |
11120811 |
ttgtccccaaataat---aatataatggttttttcacaataactatagatattaaaagtgttggagtttcatgtgtgagatagaagcctctcattaaatg |
11120715 |
T |
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| Q |
189 |
aaaaaatggaatatatgcacatataagtgagaggggttgatgctatcttgttttgagtgaatggtatgcaacatacatgg |
268 |
Q |
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| T |
11120714 |
aaaaaatggaatatatgcacatataagtgagaggggttgatgctatcttgttttgagtgaatggtatgcaacatacatgg |
11120635 |
T |
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