View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11865_low_14 (Length: 267)
Name: NF11865_low_14
Description: NF11865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11865_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 48507687 - 48507434
Alignment:
| Q |
4 |
tgcaaaaccaaacatacatatacgttctaataaaacttgtacataaacttacaacgttataacataataatagcattagcatagcaaattaaaactcact |
103 |
Q |
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| T |
48507687 |
tgcaaaaccaaacatacatatacgttctaataaaacttgtacataaacttacaacgttataacataataatagcattagcatagcaaattaaaactcact |
48507588 |
T |
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| Q |
104 |
ttgaagtttgtcacaatgacataaaaatcatatggaaactaatatgcaaaaacacccatgataaaccaacttatttgaaataatcaaatgtggcgtatag |
203 |
Q |
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| T |
48507587 |
ttgaagtttgtcacaatgacataaaaattatatggaaactaatatgcaaaaacacccatgataaaccaacttatttgaaataatcaaatgtggcgtatag |
48507488 |
T |
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| Q |
204 |
tttctaagtttagttcccactcccagcatcaaattcttgctatatatgcctatg |
257 |
Q |
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| T |
48507487 |
tttctaagtttagttcccactcccagcatcaaattcttgctatatatgcctatg |
48507434 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 2487280 - 2487213
Alignment:
| Q |
151 |
aaaaacacccatgataaaccaacttatttgaaataatcaaatgtggc---gtatagtttctaagttta |
215 |
Q |
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| T |
2487280 |
aaaaacacccatgataaacaaaattatttgaaataatcaaatgtgacatgttatagtttctaagttta |
2487213 |
T |
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