View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11865_low_4 (Length: 622)
Name: NF11865_low_4
Description: NF11865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11865_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 18 - 612
Target Start/End: Original strand, 18468178 - 18468771
Alignment:
| Q |
18 |
ctttctatatttgaaaaccatccaatacaaccttcatcaacgcaatgaaccaccaaacacaacgagcgagatggatcgacgaaaactgaaggcccccaaa |
117 |
Q |
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| T |
18468178 |
ctttctatatttgaaaaccatccaatacaaccttcgtcaacgcaatgaaccaccaaacacaacgagcgagatggatcgacgaaaactgaaggcccccaaa |
18468277 |
T |
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| Q |
118 |
tcggaccgctattgccgaatacagcaacaatcacccaatccttgaaagttaagcaaaaccatcggctaccgccataaaggagaagaagtagttaaaaaag |
217 |
Q |
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| T |
18468278 |
tcggaccgctgttgccgaatacagcaacaatcacccaatccttgatagttaagcaaaaccatcggctaccgccataaaggagaagaagtagttgaaaa-g |
18468376 |
T |
|
| Q |
218 |
acccatatgggtttcatgaacaaactgcagatcgccaagtcaaagaccgcaaactggtctaaatcctacaaaaccaccagcaccggaaacaccatcaggt |
317 |
Q |
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| T |
18468377 |
acccatatgggtttcatgaacaaactgcagatcgccaagtcaaagaccgcaaactggtctaaatcctacaaaaccaccagcaccgaaaacgccatcaggt |
18468476 |
T |
|
| Q |
318 |
ctggaagaggggtggtgcggatggccagcaccactcatcgcaccactaggaaggccgccattacatatctaagaaggagtttggaaatagggagggttgt |
417 |
Q |
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| T |
18468477 |
ctggaagaggggtggtgcggatggccagcaccactcatcgcaccactaggaaggccgccattacatatctaagaaggagtttggaaatagggagggttgt |
18468576 |
T |
|
| Q |
418 |
ggcggcgataagcttttagagagggttcaaatccccaattttcacccattgagctaacttttgggggttgagtttcctttagtttgtcaccatcaaccct |
517 |
Q |
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| T |
18468577 |
ggcggcgagaagcttttagagagggttcaaatccccaattttcacccattgagctaacttttgggggttgagtttcctttagtttgtcaccatcaaccct |
18468676 |
T |
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| Q |
518 |
taaatttgaacacctttatatttcatacattcatttaacacactattttctctatgtccctctctttctatcacattatcctctctctatctctg |
612 |
Q |
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| T |
18468677 |
taaatttgaacacctttatatttcatacattcatttaacacactattttctctatgtccctctctttctatcacattatcctctctctatctctg |
18468771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 22460996 - 22461072
Alignment:
| Q |
287 |
aaaaccaccagcaccggaaacaccatcaggtctggaagaggggtggtgcggatggccagcaccactcatcgcaccac |
363 |
Q |
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| T |
22460996 |
aaaaccaccaacaccataaacgctgtcaggtcaggaagaggggtggtgcggagggccagcgccgctcatcggaccac |
22461072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 22460775 - 22460925
Alignment:
| Q |
90 |
ggatcgacgaaaactgaaggcccccaaatcggaccgctattgccgaatacagcaac-aatcacccaatccttgaaagttaagcaaaaccatcggctaccg |
188 |
Q |
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||||||||||||| |||||||| ||| |||||||| ||||||| | | |||||| || |||||||||||||||| || |||||||| | ||||| |
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| T |
22460775 |
ggatcgacgaaaaatgaaggccgccagatcggaccactattgctagagatagcaacaaagcacccaatccttgaaacacaatcaaaaccaatgactacca |
22460874 |
T |
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| Q |
189 |
ccataaaggagaagaagtagttaaaaaagacccatatgggtttcatgaaca |
239 |
Q |
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| T |
22460875 |
ccattaaggaccaaaagttgttgaaataggcccataagggtttcttgaaca |
22460925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 8119729 - 8119779
Alignment:
| Q |
313 |
caggtctggaagaggggtggtgcggatggccagcaccactcatcgcaccac |
363 |
Q |
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| T |
8119729 |
caggtcaggaagaggggtggtggggagggccagcgccgctcatcgcaccac |
8119779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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