View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11865_low_5 (Length: 589)
Name: NF11865_low_5
Description: NF11865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11865_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 9 - 573
Target Start/End: Complemental strand, 15380186 - 15379623
Alignment:
| Q |
9 |
agagaaagatgacgagacacatgacctcataaggggctgaattgtcactcgcatttgtggcaacactttagggggtttcctttggttattgtcaatcaca |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15380186 |
agaggaagatgacgagacacatgacctcataaggggctggattgtcactcgcatttgtggcaacactttagggggtttcctttggttattgtcaatcaca |
15380087 |
T |
|
| Q |
109 |
agttcttgcatcaactggtagcaccctataattttctcctgaaaaatgaaataaatgtgctttaataaaacaacttaataatgttgttactatttaaaag |
208 |
Q |
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| T |
15380086 |
agttcttgcatcaactggtagcaccctataattttctcctgaaaaatgaaataaatgtgctttaataaa-caacttaataatgttgttactatttaaaat |
15379988 |
T |
|
| Q |
209 |
tatacaacaactatcaaatgttcaaaacatgcttattgcaatgacaccataattaagtcaaaaactacactagtttcaacgaaaacacgataattttgtt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15379987 |
tatacaacaactatcaaatgttcaaaacatgcttattgcaatgacaccataattaagtcaaaaactacactagtttcaacgaaaacacgataattttgtt |
15379888 |
T |
|
| Q |
309 |
aaattcatcgcgattccaaacattcacttacttttcttagcccctcgcaccacgactcggcatgctcgggctcaacgagagaccaattaggaatttcgtt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15379887 |
aaattcatcgcgattccaaacattcacttacttttcttagcccctcgcaccacgactcggcatgctcgggctcaacgagagaccaattaggaatttcgtt |
15379788 |
T |
|
| Q |
409 |
agctgcatagagtatagccgcggcagcaatgcatgagggccaatatgcaagaatgctggcctctgcaaaaatatattcacaaattgaagaaaagttaaag |
508 |
Q |
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| T |
15379787 |
agctgcatagagtatagccgcggcagcaatgcatgagggccaatatgcaagaatgctggcctctgcaaaaatatattcacaaattgaagaaaagttaaag |
15379688 |
T |
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| Q |
509 |
tacaatacaacacaaattcactattactagtacttcacaacattttgttgacaaaagttaattct |
573 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
15379687 |
tacaatacaacacaaattcactattactagtacttcacaacattttgttgacacaaattaattct |
15379623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 415 - 554
Target Start/End: Original strand, 7706544 - 7706683
Alignment:
| Q |
415 |
atagagtatagccgcggcagcaatgcatgagggccaatatgcaagaatgctggcctctgcaaaaatatattcacaaattgaagaaaagttaaagtacaat |
514 |
Q |
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|||| ||||||||||||||| |||||||||||||||| || ||| ||| ||||||||||||||||||||||||||| |||| |||||||||||| | | |
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| T |
7706544 |
atagggtatagccgcggcagtaatgcatgagggccaacatccaataattctggcctctgcaaaaatatattcacaagctgaaataaagttaaagtatatt |
7706643 |
T |
|
| Q |
515 |
acaacacaaattcactattactagtacttcacaacatttt |
554 |
Q |
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| T |
7706644 |
acaacacaagttaactagtactagtattttacatcatttt |
7706683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 449
Target Start/End: Original strand, 26436109 - 26436223
Alignment:
| Q |
335 |
cttacttttcttagcccctcgcaccacgactcggcatgctcgggctcaacgagagaccaattaggaatttcgttagctgcatagagtatagccgcggcag |
434 |
Q |
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|||||||| ||||| || || ||||| || || |||||||| || | ||| | |||||||||||||||||| ||||||||| ||||||| || || |||| |
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| T |
26436109 |
cttactttgcttagtccttcacaccatgattcagcatgctcaggattaacaaaagaccaattaggaatttcattagctgcagagagtatggcagctgcag |
26436208 |
T |
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| Q |
435 |
caatgcatgagggcc |
449 |
Q |
| |
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|||||||||| |||| |
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| T |
26436209 |
caatgcatgatggcc |
26436223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 26435887 - 26435981
Alignment:
| Q |
55 |
actcgcatttgtggcaacactttagggggtttcctttggttattgtcaatcacaagttcttgcatcaactggtagcaccctataattttctcctg |
149 |
Q |
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||||||| ||||||||||||||||||| || |||||||||||| | | |||| |||||| ||||| | ||||||||||||||||| ||||| |
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| T |
26435887 |
actcgcaactgtggcaacactttaggggcatttctttggttattgctacttacaatttcttgaatcaattcatagcaccctataattttttcctg |
26435981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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