View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11866_high_14 (Length: 343)

Name: NF11866_high_14
Description: NF11866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11866_high_14
NF11866_high_14
[»] chr5 (5 HSPs)
chr5 (1-327)||(4909515-4909841)
chr5 (150-225)||(4907694-4907769)
chr5 (123-173)||(14947482-14947532)
chr5 (184-225)||(13655606-13655647)
chr5 (124-172)||(14946713-14946761)
[»] chr8 (10 HSPs)
chr8 (123-327)||(26492032-26492236)
chr8 (184-267)||(39255656-39255739)
chr8 (184-255)||(44751669-44751740)
chr8 (123-173)||(41709588-41709638)
chr8 (184-249)||(61515-61580)
chr8 (1-122)||(32927851-32927976)
chr8 (184-249)||(1365890-1365955)
chr8 (204-268)||(4627015-4627080)
chr8 (123-175)||(41708416-41708468)
chr8 (213-267)||(12351811-12351865)
[»] chr3 (5 HSPs)
chr3 (123-327)||(4486468-4486671)
chr3 (124-172)||(49085300-49085348)
chr3 (195-267)||(17227040-17227112)
chr3 (123-171)||(35441777-35441825)
chr3 (3-59)||(41596152-41596208)
[»] chr4 (9 HSPs)
chr4 (184-288)||(55159949-55160054)
chr4 (123-168)||(30137132-30137177)
chr4 (123-168)||(30138250-30138295)
chr4 (184-249)||(47198666-47198731)
chr4 (184-249)||(28683568-28683633)
chr4 (184-291)||(43737654-43737762)
chr4 (123-171)||(47925548-47925596)
chr4 (65-120)||(35065024-35065079)
chr4 (1-120)||(32818371-32818494)
[»] chr1 (12 HSPs)
chr1 (184-288)||(35615827-35615932)
chr1 (184-288)||(37874125-37874230)
chr1 (184-267)||(48869830-48869913)
chr1 (184-249)||(17496084-17496149)
chr1 (123-174)||(10459768-10459819)
chr1 (1-64)||(7524134-7524197)
chr1 (123-189)||(38634943-38635009)
chr1 (123-172)||(48980706-48980755)
chr1 (123-168)||(50137020-50137065)
chr1 (123-171)||(8673662-8673710)
chr1 (126-182)||(8674679-8674735)
chr1 (123-175)||(27969896-27969948)
[»] chr6 (2 HSPs)
chr6 (184-288)||(9573696-9573801)
chr6 (123-171)||(11768604-11768653)
[»] chr2 (2 HSPs)
chr2 (184-267)||(5276526-5276609)
chr2 (123-168)||(33473866-33473911)
[»] chr7 (6 HSPs)
chr7 (123-168)||(11694798-11694843)
chr7 (123-174)||(21460131-21460182)
chr7 (123-189)||(19794398-19794464)
chr7 (123-171)||(45720726-45720774)
chr7 (1-59)||(40491604-40491662)
chr7 (152-225)||(19737904-19737977)
[»] scaffold1037 (1 HSPs)
scaffold1037 (196-291)||(2102-2198)
[»] scaffold1031 (1 HSPs)
scaffold1031 (196-291)||(2220-2316)


Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 4909841 - 4909515
Alignment:
Q  1 gtaaaagttagttaaactttaaacttgtgagtaaaaatcaattcaataatcaagagctataaatgcttcaagtaaaatcatttataaaggtaaaataaac 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4909841 gtaaaagttagttaaactttaaacttgtgcgtaaaaatcaattcaataatcaagagctacaaatgcttcaagtaaaatcatttataaaggtaaaataaac 4909742  T
Q  101 tctactcgaaagcaaccaaacagtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagttttttcttgacccttggatcacataaagag 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4909741 tctactcgaaagcaaccaaacggtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagttttttcttgacccttggatcacataaagag 4909642  T
Q  201 cacactattacaatagtctctcaacgctagatttttatctcaccatctttcccaaccattctctctccatgaatctctcaaccactatcttcatattctc 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4909641 cacactattacaatagtctctcaacactagatttttatctcaccatctttcccaaccattctctctccatgaatctcccaaccactatcttcatattctc 4909542  T
Q  301 ttttccattccatggtgtatttttcat 327  Q
    ||||||||| |||||||||||||||||    
T  4909541 ttttccatttcatggtgtatttttcat 4909515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 4907694 - 4907769
Alignment:
Q  150 acttgtgcaccatgcacaagttttttcttgacccttggatcacataaagagcacactattacaatagtctctcaac 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  4907694 acttgtgcaccatgcacaagttttttcttgacccttggatcacataaagagcacactattataatagtcactcaac 4907769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 14947532 - 14947482
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagtttt 173  Q
    |||||||||||  ||||||||| | ||| ||||||||||||||||||||||    
T  14947532 gtggcatttagcatgcacaagtataaaatttgtgcaccatgcacaagtttt 14947482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 13655647 - 13655606
Alignment:
Q  184 ttggatcacataaagagcacactattacaatagtctctcaac 225  Q
    |||||||| | ||||| |||||||||||||||||||||||||    
T  13655647 ttggatcatacaaagaacacactattacaatagtctctcaac 13655606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 14946713 - 14946761
Alignment:
Q  124 tggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagttt 172  Q
    |||||||||||||||||||  || |||||||||||||||| | ||||||    
T  14946713 tggcatttagggtgcacaaacgtaaaacttgtgcaccatggaaaagttt 14946761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 123 - 327
Target Start/End: Original strand, 26492032 - 26492236
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagttttttcttgacccttggatcacataaagagcacactattacaatagtctctc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26492032 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagttttttcttgacccttggatcacataaagagtacactattacaatagtctctc 26492131  T
Q  223 aacgctagatttttatctcaccatctttcccaaccattctctctccatgaatctctcaaccactatcttcatattctcttttccattccatggtgtattt 322  Q
    ||| |||||||||||| |||||||| ||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  26492132 aacactagatttttatgtcaccatcattcccaaccattctctctccatgaatcttccaaccactatcttcatcttctcttttccattccatggtgtattt 26492231  T
Q  323 ttcat 327  Q
    |||||    
T  26492232 ttcat 26492236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 39255739 - 39255656
Alignment:
Q  184 ttggatcacataaagagcacactattacaatagtctctcaacgctagatttttatctcaccatctttcccaaccattctctctc 267  Q
    |||||||| | ||||| ||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||| | ||||||    
T  39255739 ttggatcatacaaagaacacactattacaatagtctctcaacactagatttttatcttactatcttccccaaccactttctctc 39255656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 44751669 - 44751740
Alignment:
Q  184 ttggatcacataaagagcacactattacaatagtctctcaacgctagatttttatctcaccatctttcccaa 255  Q
    |||||||| | ||||| ||||||||||||||||||||||||| |||||||||||||| || ||||| |||||    
T  44751669 ttggatcatacaaagaacacactattacaatagtctctcaacactagatttttatcttactatcttccccaa 44751740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 41709638 - 41709588
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagtttt 173  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  41709638 gtggcatttagggtgcacaaatgttaaatttgtgcaccatacacaagtttt 41709588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 61515 - 61580
Alignment:
Q  184 ttggatcacataaagagcacactattacaatagtctctcaacgctagatttttatctcaccatctt 249  Q
    |||||||| | ||||| ||||||||||||||||||||||||| ||||||| |||||| || |||||    
T  61515 ttggatcatacaaagaacacactattacaatagtctctcaacactagattcttatcttactatctt 61580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 32927976 - 32927851
Alignment:
Q  1 gtaaaagttagttaaactttaaacttgtgagtaaaaatcaattcaataatcaagagctataaat----gcttcaagtaaaatcatttataaaggtaaaat 96  Q
    |||||||| |||| |||| |||| ||||| |||||||| ||||| |||||||| ||||| ||||    |||||||||| |||||  |||  ||| |||||    
T  32927976 gtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagtagaatcaactattgaggcaaaat 32927877  T
Q  97 aaactctactcgaaagcaaccaaaca 122  Q
     || |||||| |||||||||||||||    
T  32927876 caattctactggaaagcaaccaaaca 32927851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 1365890 - 1365955
Alignment:
Q  184 ttggatcacataaagagcacactattacaatagtctctcaacgctagatttttatctcaccatctt 249  Q
    |||||||| | ||||| |||||| |||||||||||||||||| ||||||| |||||| || |||||    
T  1365890 ttggatcatacaaagaacacactgttacaatagtctctcaacactagattcttatcttactatctt 1365955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 4627015 - 4627080
Alignment:
Q  204 actattacaatagtctct-caacgctagatttttatctcaccatctttcccaaccattctctctcc 268  Q
    ||||||||||||||| |  |||| |||||||| |||||||| ||||| ||||||||||||||||||    
T  4627015 actattacaatagtccccacaacactagatttgtatctcactatcttccccaaccattctctctcc 4627080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 41708416 - 41708468
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagtttttt 175  Q
    |||||||||||  ||||||| | ||||| ||||||||||||||||||||||||    
T  41708416 gtggcatttagaatgcacaaatattaaatttgtgcaccatgcacaagtttttt 41708468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 12351865 - 12351811
Alignment:
Q  213 atagtctctcaacgctagatttttatctcaccatctttcccaaccattctctctc 267  Q
    ||||||||||||| |||||||||||||| || ||||| |||||||| | ||||||    
T  12351865 atagtctctcaacactagatttttatcttactatcttccccaaccactttctctc 12351811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 123 - 327
Target Start/End: Complemental strand, 4486671 - 4486468
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagttttttcttgacccttggatcacataaagagcacactattacaatagtctctc 222  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||     
T  4486671 gtggcatttagggtgcacaagtgttaaacttgtgcaccattcacaagtttttt-ttgacccttggatcacataaaaagcacactattacaatagtctcta 4486573  T
Q  223 aacgctagatttttatctcaccatctttcccaaccattctctctccatgaatctctcaaccactatcttcatattctcttttccattccatggtgtattt 322  Q
    ||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||||| |    
T  4486572 aacactaaatttttatctcagcatctttcccaaccattctctctccatgaatctcccaaccattatcttcgtcttctcttttccattccatggtgtatgt 4486473  T
Q  323 ttcat 327  Q
    |||||    
T  4486472 ttcat 4486468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 49085300 - 49085348
Alignment:
Q  124 tggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagttt 172  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  49085300 tggcatttaggatgcacaagtgttaaatttgtgcaccatgcacaagttt 49085348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 17227040 - 17227112
Alignment:
Q  195 aaagagcacactattacaatagtctctcaacgctagatttttatctcaccatctttcccaaccattctctctc 267  Q
    ||||| |||||||||||||||||| |||||| ||||||||||||||  | ||||| |||||||| | ||||||    
T  17227040 aaagaacacactattacaatagtccctcaacactagatttttatcttcctatcttccccaaccactttctctc 17227112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 35441777 - 35441825
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagtt 171  Q
    ||||||||||||||||| || || |||| ||||||||||||||||||||    
T  35441777 gtggcatttagggtgcataaatgataaatttgtgcaccatgcacaagtt 35441825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 41596152 - 41596208
Alignment:
Q  3 aaaagttagttaaactttaaacttgtgagtaaaaatcaattcaataatcaagagcta 59  Q
    |||||| ||| ||||| |||||||||| ||||||||||||||  ||||||| |||||    
T  41596152 aaaagtgagtcaaactataaacttgtgtgtaaaaatcaattctttaatcaaaagcta 41596208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 184 - 288
Target Start/End: Complemental strand, 55160054 - 55159949
Alignment:
Q  184 ttggatcacataaagagcacactattacaatagtctctcaacgctagatttttatctcaccatctttcccaaccattctctctc-catgaatctctcaac 282  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||| | |||||| ||||  ||||||| |    
T  55160054 ttggatcatataaagaacacactattacaatagtctctcaacactagatttttatcttactatcttccccaaccactttctctcacatgcctctctcacc 55159955  T
Q  283 cactat 288  Q
    ||||||    
T  55159954 cactat 55159949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 30137132 - 30137177
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaa 168  Q
    |||||||||||  |||||||||||||||||||||||||||||||||    
T  30137132 gtggcatttagaatgcacaagtgttaaacttgtgcaccatgcacaa 30137177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 30138295 - 30138250
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaa 168  Q
    |||||||||||  |||||||||||||||||||||||||||||||||    
T  30138295 gtggcatttagaatgcacaagtgttaaacttgtgcaccatgcacaa 30138250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 47198666 - 47198731
Alignment:
Q  184 ttggatcacataaagagcacactattacaatagtctctcaacgctagatttttatctcaccatctt 249  Q
    |||||||| | ||||| ||||||||||||||||||||||||| ||||||| |||||| || |||||    
T  47198666 ttggatcatacaaagaacacactattacaatagtctctcaacactagattcttatcttactatctt 47198731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 28683568 - 28683633
Alignment:
Q  184 ttggatcacataaagagcacactattacaatagtctctcaacgctagatttttatctcaccatctt 249  Q
    |||||||| | ||||| | ||||||||||||||||||||||| ||||||| |||||| || |||||    
T  28683568 ttggatcatacaaagaacgcactattacaatagtctctcaacactagattcttatcttactatctt 28683633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 291
Target Start/End: Original strand, 43737654 - 43737762
Alignment:
Q  184 ttggatcacataaagagcacactattacaatagtctctcaacgctagatttttatctcaccatctttcccaaccattctctctc-catgaatctctcaac 282  Q
    |||||||| ||||||| ||||||||||| |||| |||| ||| || ||||||||| | || |||||| ||||||| ||| |||| ||||  ||||||| |    
T  43737654 ttggatcatataaagaacacactattactatagcctcttaacactggatttttatattactatcttttccaaccactctatctcacatgtctctctcacc 43737753  T
Q  283 cactatctt 291  Q
    ||| |||||    
T  43737754 caccatctt 43737762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 47925548 - 47925596
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagtt 171  Q
    |||||||||| ||||||||| ||||||| ||||||||||| ||||||||    
T  47925548 gtggcatttaaggtgcacaaatgttaaatttgtgcaccatacacaagtt 47925596  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 35065079 - 35065024
Alignment:
Q  65 gcttcaagtaaaatcatttataaaggtaaaataaactctactcgaaagcaaccaaa 120  Q
    |||||||||||||||| ||||  ||| ||||| || ||||||||||||||||||||    
T  35065079 gcttcaagtaaaatcaattattgaggcaaaatcaattctactcgaaagcaaccaaa 35065024  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 32818371 - 32818494
Alignment:
Q  1 gtaaaagttagttaaactttaaacttgtgagtaaaaatcaattcaataatcaagagctataaat----gcttcaagtaaaatcatttataaaggtaaaat 96  Q
    ||||||||||||| |||| |||| ||||| | |||||||||||| | |||||| ||||| ||||    ||||||| || ||||| || |  ||| |||||    
T  32818371 gtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaatcaattctggaggcaaaat 32818470  T
Q  97 aaactctactcgaaagcaaccaaa 120  Q
     || |||||||||||| |||||||    
T  32818471 caattctactcgaaagaaaccaaa 32818494  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 35615827 - 35615932
Alignment:
Q  184 ttggatcacataaagagcacactattacaatagtctctcaacgctagatttttatctcaccatctttcccaaccattctctctc-catgaatctctcaac 282  Q
    |||||||| | ||||| ||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||| | |||||| ||||  ||||||| |    
T  35615827 ttggatcatacaaagaacacactattacaatagtctctcaacactagatttttatcttactatcttccccaaccactttctctcacatgcctctctcacc 35615926  T
Q  283 cactat 288  Q
    ||||||    
T  35615927 cactat 35615932  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 37874125 - 37874230
Alignment:
Q  184 ttggatcacataaagagcacactattacaatagtctctcaacgctagatttttatctcaccatctttcccaaccattctctctc-catgaatctctcaac 282  Q
    |||||||| | ||||| ||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||| | |||||| ||||  ||||||| |    
T  37874125 ttggatcatacaaagaacacactattacaatagtctctcaacactagatttttatcttactatcttccccaaccactttctctcacatgcctctctcacc 37874224  T
Q  283 cactat 288  Q
    ||||||    
T  37874225 cactat 37874230  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 48869830 - 48869913
Alignment:
Q  184 ttggatcacataaagagcacactattacaatagtctctcaacgctagatttttatctcaccatctttcccaaccattctctctc 267  Q
    |||||||| | ||||| ||||||||||||||||||||||||| |||||||||||||  || ||||| |||||||| | ||||||    
T  48869830 ttggatcatacaaagaacacactattacaatagtctctcaacactagatttttatcatactatcttccccaaccactttctctc 48869913  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 17496149 - 17496084
Alignment:
Q  184 ttggatcacataaagagcacactattacaatagtctctcaacgctagatttttatctcaccatctt 249  Q
    |||||||| ||||||| |||||||||||||||||||||| || ||||||| |||||| || |||||    
T  17496149 ttggatcatataaagaacacactattacaatagtctctccacactagattattatcttactatctt 17496084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 10459768 - 10459819
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagttttt 174  Q
    |||||||||||| ||||||| ||||||| ||||||||||| |||||||||||    
T  10459768 gtggcatttaggatgcacaaatgttaaatttgtgcaccatacacaagttttt 10459819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 7524197 - 7524134
Alignment:
Q  1 gtaaaagttagttaaactttaaacttgtgagtaaaaatcaattcaataatcaagagctataaat 64  Q
    |||||||| |||| |||| |||| ||||| |||||||||||||| |||||||| ||||| ||||    
T  7524197 gtaaaagtgagttgaactataaatttgtgtgtaaaaatcaattctataatcaaaagctacaaat 7524134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 38635009 - 38634943
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagttttttcttgacccttggat 189  Q
    |||||||||||  ||||||| || |||| ||||||| |||||||||||||||| | |||| ||||||    
T  38635009 gtggcatttagcatgcacaattgataaatttgtgcatcatgcacaagttttttttggaccattggat 38634943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 48980706 - 48980755
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagttt 172  Q
    |||||||||||  |||||||||  |||||||||||||||| |||||||||    
T  48980706 gtggcatttagcatgcacaagtcataaacttgtgcaccattcacaagttt 48980755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 50137020 - 50137065
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaa 168  Q
    |||||||||||  |||| |||||||||| |||||||||||||||||    
T  50137020 gtggcatttagtatgcataagtgttaaatttgtgcaccatgcacaa 50137065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 8673662 - 8673710
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagtt 171  Q
    ||||||||||||||||||||   ||||| ||||||||||| ||||||||    
T  8673662 gtggcatttagggtgcacaaacattaaatttgtgcaccatacacaagtt 8673710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 8674735 - 8674679
Alignment:
Q  126 gcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagttttttcttgacc 182  Q
    ||||||||| ||||||| ||||| | ||||||||||| |||||||||| | ||||||    
T  8674735 gcatttaggatgcacaaatgttagatttgtgcaccatacacaagttttattttgacc 8674679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 27969948 - 27969896
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagtttttt 175  Q
    |||||||||||| ||||||| |  |||| ||||||||||| ||||||||||||    
T  27969948 gtggcatttaggatgcacaaatactaaatttgtgcaccatacacaagtttttt 27969896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 9573696 - 9573801
Alignment:
Q  184 ttggatcacataaagagcacactattacaatagtctctcaacgctagatttttatctcaccatctttcccaaccattctctctc-catgaatctctcaac 282  Q
    |||||||| | ||||| |||||| |||||||||||||||||| |||||||||||||| || ||||| |||||||| | |||||| ||||  ||||||| |    
T  9573696 ttggatcatacaaagaacacactgttacaatagtctctcaacactagatttttatcttactatcttccccaaccactttctctcacatgcctctctcacc 9573795  T
Q  283 cactat 288  Q
    ||||||    
T  9573796 cactat 9573801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 11768604 - 11768653
Alignment:
Q  123 gtggcatttagggtgcacaagt-gttaaacttgtgcaccatgcacaagtt 171  Q
    |||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  11768604 gtggcatttagggtgcacaaattgttaaatttgtgcaccatgcacaagtt 11768653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 5276526 - 5276609
Alignment:
Q  184 ttggatcacataaagagcacactattacaatagtctctcaacgctagatttttatctcaccatctttcccaaccattctctctc 267  Q
    |||||||| | ||||| |||||| |||||||||||||||||| |||||||||||||| || ||||| |||||||| | ||||||    
T  5276526 ttggatcatacaaagaacacactgttacaatagtctctcaacactagatttttatcttactatcttccccaaccactttctctc 5276609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 33473866 - 33473911
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaa 168  Q
    |||||||||||  ||||||||||||||| |||||||||||||||||    
T  33473866 gtggcatttagtatgcacaagtgttaaatttgtgcaccatgcacaa 33473911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 11694798 - 11694843
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaa 168  Q
    |||||||||||  |||||||||||||||||||||||||||||||||    
T  11694798 gtggcatttagtatgcacaagtgttaaacttgtgcaccatgcacaa 11694843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 21460131 - 21460182
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagttttt 174  Q
    |||||||||||| ||||||| ||||||| ||||| |||||||||||||||||    
T  21460131 gtggcatttaggatgcacaaatgttaaatttgtgtaccatgcacaagttttt 21460182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 19794398 - 19794464
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagttttttcttgacccttggat 189  Q
    |||||||||||  ||||||| || |||| |||||||||||||||||||||||| | |||| ||||||    
T  19794398 gtggcatttagcatgcacaattgataaatttgtgcaccatgcacaagttttttttggaccattggat 19794464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 45720726 - 45720774
Alignment:
Q  123 gtggcatttagggtgcacaagtgttaaacttgtgcaccatgcacaagtt 171  Q
    ||||||||||||||||| || || |||| ||||||||||||||||||||    
T  45720726 gtggcatttagggtgcataaatgataaatttgtgcaccatgcacaagtt 45720774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 40491662 - 40491604
Alignment:
Q  1 gtaaaagttagttaaactttaaacttgtgagtaaaaatcaattcaataatcaagagcta 59  Q
    |||||||| |||||||||||||| ||||| |||||| ||||||| | |||||| |||||    
T  40491662 gtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaattctagaatcaaaagcta 40491604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 19737977 - 19737904
Alignment:
Q  152 ttgtgcaccatgcacaagttttttcttgacccttggatcacataaagagcacactattacaatagtctctcaac 225  Q
    ||||||||||||||||| |||||| |  | | || ||||| ||||  | |||||||||||||||||||||||||    
T  19737977 ttgtgcaccatgcacaaattttttatacatcattagatcatataagaaacacactattacaatagtctctcaac 19737904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1037 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 291
Target Start/End: Original strand, 2102 - 2198
Alignment:
Q  196 aagagcacactattacaatagtctctcaacgctagatttttatctcaccatctttcccaaccattctctctc-catgaatctctcaaccactatctt 291  Q
    |||| ||||||||||| ||||||||| ||| || ||||||||| | || |||||| ||||||| ||| |||| ||||  ||||||| |||| |||||    
T  2102 aagaacacactattactatagtctcttaacactggatttttatattactatcttttccaaccactctatctcacatgtctctctcacccaccatctt 2198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1031 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 291
Target Start/End: Original strand, 2220 - 2316
Alignment:
Q  196 aagagcacactattacaatagtctctcaacgctagatttttatctcaccatctttcccaaccattctctctc-catgaatctctcaaccactatctt 291  Q
    |||| ||||||||||| ||||||||| ||| || ||||||||| | || |||||| ||||||| ||| |||| ||||  ||||||| |||| |||||    
T  2220 aagaacacactattactatagtctcttaacactggatttttatattactatcttttccaaccactctatctcacatgtctctctcacccaccatctt 2316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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