View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11866_high_20 (Length: 247)
Name: NF11866_high_20
Description: NF11866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11866_high_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 47416965 - 47417190
Alignment:
| Q |
22 |
gcaggttggctatactacttgccaaggcgaaaaacaaaggaaaatgttcatgcttcactgaaagatttgaagaacataaatctgattctccacctgtccc |
121 |
Q |
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| T |
47416965 |
gcaggttggctatactacttgccaaggcgaaaaacaaaggaaaatgttcatgcttcactgaaagatttgaagaacataaatctgattctccacctgtccc |
47417064 |
T |
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| Q |
122 |
ccaggaaaagaagagcaaaaaggacattgttattggtacctggcgagatatttttgctgttgaaaatttttcctttttatatgaaatatgattttggtta |
221 |
Q |
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| T |
47417065 |
ccaggaaaagaagagcaaaaaggacattgttattggtacctggcgagatatttttgctgttgaaaaattttcctttttatatgaaatatgattttggtta |
47417164 |
T |
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| Q |
222 |
cacgccaataaattttccttttccta |
247 |
Q |
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||| |||||||||||||||||||||| |
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| T |
47417165 |
cacaccaataaattttccttttccta |
47417190 |
T |
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