View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11866_high_4 (Length: 606)
Name: NF11866_high_4
Description: NF11866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11866_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 5 - 586
Target Start/End: Complemental strand, 51935406 - 51934825
Alignment:
| Q |
5 |
cagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcattacatgacttcatcaactagcatagacatgaatcttacaagaaagga |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51935406 |
cagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcattacatgacttcatcaactagcatagacatgaatcttacaagaaagga |
51935307 |
T |
|
| Q |
105 |
aatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctctttagtttaatgcactacctcatgccgaagcgcaatattctctccctacat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51935306 |
aatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctctttagtttaatgcactacctcatgccgaagcgcaatattctctccctacat |
51935207 |
T |
|
| Q |
205 |
tctggatgtaatatgggcaaaaatggcgctgttgcgctcttttttggattatcaggtgaagtttgatgactaccttttatcaattgatgtttgcgtgtag |
304 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51935206 |
tctggatgtaatatgggcaaaaatggcgatgttgcgctcttttttggattatcaggtgaagtttgataactaccttttatcaattgatgtttgcgtgtag |
51935107 |
T |
|
| Q |
305 |
tattgagtttctattaatctggttaattttgtgatctcttaggtactggaaagactactctttctaccgatcataaccggtatttgattggagatgatga |
404 |
Q |
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| T |
51935106 |
tattgagtttctattaatctggttaattttgtgatctcttaggtactggaaagactactctttctaccgatcataaccggtatttgattggagatgatga |
51935007 |
T |
|
| Q |
405 |
gcattgctggagtgaaaatggggtgtcaaatattgaaggaggttgctatgcaaagtgtgttgatctttcaaaggataaggaaccagatatctggaatgcc |
504 |
Q |
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| T |
51935006 |
gcattgctggagtgaaaatggggtgtcaaatattgaaggaggttgctatgctaagtgtgttgatctttcaaaggataaggaaccagatatctggaatgcc |
51934907 |
T |
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| Q |
505 |
atcaaatttgggacaggtaacaaacaatcttcaattaaatttgacgaaatctatggtgtcatcccacctgacaaacaattat |
586 |
Q |
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| T |
51934906 |
atcaaatttgggacaggtaacaaacaatcttcaattaaatttgacgaaatctatggtgtcatcccacctgacaaacaattat |
51934825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 12996099 - 12995848
Alignment:
| Q |
10 |
ttcactatatacaatgcaggacagttcccttgtaatcgttttactcattacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatgg |
109 |
Q |
| |
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||||||||||||||||| ||| |||| || ||||| ||||| ||||| |||||||| || || |||||||| || | |||||| | |||| |||||||| |
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| T |
12996099 |
ttcactatatacaatgccggaaagtttccatgtaaccgtttcactcactacatgacatcttccactagcattgatcttaatcttgctagaagggaaatgg |
12996000 |
T |
|
| Q |
110 |
tcatccttggcacacaatatgctggagaaatgaagaaaggtctctttagtttaatgcactacctcatgccgaagcgcaatattctctccctacattctgg |
209 |
Q |
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| T |
12995999 |
ttatcctcggcacacaatacgccggggaaatgaagaaaggtcttttcagtgtcatgcattatctcatgcctaagcgccaaattctctccttacactctgg |
12995900 |
T |
|
| Q |
210 |
atgtaatatgggcaaaaatggcgctgttgcgctcttttttggattatcaggt |
261 |
Q |
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| ||||||||||||| ||||| |||||| ||||| |||||| | |||||| |
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| T |
12995899 |
ttctaatatgggcaaaggtggcgatgttgctctcttctttggactctcaggt |
12995848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 13070752 - 13070501
Alignment:
| Q |
10 |
ttcactatatacaatgcaggacagttcccttgtaatcgttttactcattacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatgg |
109 |
Q |
| |
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||||||||||||||||| ||| |||| || ||||| ||||| ||||| |||||||| || || |||||||| || | |||||| | |||| |||||||| |
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| T |
13070752 |
ttcactatatacaatgccggaaagtttccatgtaaccgtttcactcactacatgacatcttccactagcattgatcttaatcttgctagaagggaaatgg |
13070653 |
T |
|
| Q |
110 |
tcatccttggcacacaatatgctggagaaatgaagaaaggtctctttagtttaatgcactacctcatgccgaagcgcaatattctctccctacattctgg |
209 |
Q |
| |
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| ||||| ||||||||||| || || ||||||||||||||||| || ||| | ||||| || |||||||| |||||| | ||||||||| |||| ||||| |
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| T |
13070652 |
ttatcctcggcacacaatacgccggggaaatgaagaaaggtcttttcagtgtcatgcattatctcatgcctaagcgccaaattctctccttacactctgg |
13070553 |
T |
|
| Q |
210 |
atgtaatatgggcaaaaatggcgctgttgcgctcttttttggattatcaggt |
261 |
Q |
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| T |
13070552 |
ttctaatatgggcaaaggtggcgatgttgctctcttctttggactctcaggt |
13070501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 344 - 455
Target Start/End: Complemental strand, 12995680 - 12995569
Alignment:
| Q |
344 |
taggtactggaaagactactctttctaccgatcataaccggtatttgattggagatgatgagcattgctggagtgaaaatggggtgtcaaatattgaagg |
443 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| | |||||||||||||||||||| ||||| |||||||| ||||| || || || |||||||| |
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| T |
12995680 |
taggtactggaaagacaactctttctactgatcataatagatatttgattggagatgatgaacattgttggagtgagaatggtgtctccaacattgaagg |
12995581 |
T |
|
| Q |
444 |
aggttgctatgc |
455 |
Q |
| |
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||||| ||||| |
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| T |
12995580 |
tggttgttatgc |
12995569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 344 - 455
Target Start/End: Complemental strand, 13070330 - 13070219
Alignment:
| Q |
344 |
taggtactggaaagactactctttctaccgatcataaccggtatttgattggagatgatgagcattgctggagtgaaaatggggtgtcaaatattgaagg |
443 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||| | |||||||||||||||||||| ||||| |||||||| ||||| || || || |||||||| |
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| T |
13070330 |
taggtactggaaagacaactctttctactgatcataatagatatttgattggagatgatgaacattgttggagtgagaatggtgtctccaacattgaagg |
13070231 |
T |
|
| Q |
444 |
aggttgctatgc |
455 |
Q |
| |
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||||| ||||| |
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| T |
13070230 |
tggttgttatgc |
13070219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 343 - 523
Target Start/End: Complemental strand, 28137717 - 28137537
Alignment:
| Q |
343 |
ttaggtactggaaagactactctttctaccgatcataaccggtatttgattggagatgatgagcattgctggagtgaaaatggggtgtcaaatattgaag |
442 |
Q |
| |
|
|||||||| ||||| ||||||||||| || |||||||| |||| |||||||||||||||||||| |||||||| |||||||| || ||||| ||||||| |
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| T |
28137717 |
ttaggtaccggaaaaactactctttcaacggatcataataggtacttgattggagatgatgagcactgctggagcgaaaatggtgtctcaaacattgaag |
28137618 |
T |
|
| Q |
443 |
gaggttgctatgcaaagtgtgttgatctttcaaaggataaggaaccagatatctggaatgccatcaaatttgggacaggta |
523 |
Q |
| |
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| ||||||||||||||||| ||||||| || | ||| || || || |||||||||||||| ||||| ||||| ||||||| |
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| T |
28137617 |
gtggttgctatgcaaagtgcattgatctctctagggagaaagagcctgatatctggaatgcaatcaagtttggtacaggta |
28137537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 5 - 261
Target Start/End: Complemental strand, 28138146 - 28137890
Alignment:
| Q |
5 |
cagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcattacatgacttcatcaactagcatagacatgaatcttacaagaaagga |
104 |
Q |
| |
|
||||||||||||| || ||||||||| ||| || |||||||||| ||| ||||||||||| || ||||| || | || | |||||| |||| ||||| |
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| T |
28138146 |
cagatttcactatttataatgcaggaaggtttccatgtaatcgttatacacattacatgacatcttcaaccagtgttgatcttaatctttcaaggaagga |
28138047 |
T |
|
| Q |
105 |
aatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctctttagtttaatgcactacctcatgccgaagcgcaatattctctccctacat |
204 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||||||||||| ||||| |||||| | ||||| || |||||||| ||||| | || || ||| |||| |
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| T |
28138046 |
aatggtcattcttggaacacaatatgctggtgaaatgaagaagggtctttttagtgtcatgcattatctcatgcctaagcgtcaaatcctttccttacac |
28137947 |
T |
|
| Q |
205 |
tctggatgtaatatgggcaaaaatggcgctgttgcgctcttttttggattatcaggt |
261 |
Q |
| |
|
||||| | |||||||||||| |||| | |||||| ||||| |||||| | |||||| |
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|
| T |
28137946 |
tctggcagcaatatgggcaaagatggtgatgttgctctcttctttggactctcaggt |
28137890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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