View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11866_high_7 (Length: 452)
Name: NF11866_high_7
Description: NF11866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11866_high_7 |
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| [»] scaffold0879 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 24422110 - 24422477
Alignment:
| Q |
1 |
aaatatttgtgaaaacgcgtcaaagcaggtgtatttcaaattagtatatcctttgtcttttagatagaagaattggcaagcatgattgagagcccaagtg |
100 |
Q |
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| T |
24422110 |
aaatatttgtgaaaacgcgtcaaagaaggtgtatttcaaattagtatatcctttgtcttttagatagaagaattggcaagcatgattgagagcccaagtg |
24422209 |
T |
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| Q |
101 |
tgaaacttatgataaagtcaaattaattccaaatttgccataattctctcatgttcaaatggaataaaatatatgtaaaagaagtaagtagtacatttaa |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24422210 |
tgaaacatatgataaagtcaaattaattccaaatttgccagaattctctaatgttcaaatggaataaaatatatgtaaaagaagtaagtagtacatttaa |
24422309 |
T |
|
| Q |
201 |
tccaaatttggactaaatacatatacagttttgct-----tatgatacatgtaatatggagtgatgcatatcatttttaattttcaaagtaatttaagtg |
295 |
Q |
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||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| |||||||||||||| | |
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| T |
24422310 |
tccaaatttggactaaatacatatacaaatttgcttataatataatacatgtaatatggagtgatgc--atcatttttaatttac--------------- |
24422392 |
T |
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| Q |
296 |
agaatgtagtgtatttgatcgtaatttggatttaatttattgttcaagaaaaccatatttctttttaaaaaac-aaattatcttt |
379 |
Q |
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| T |
24422393 |
agaatgttgtgtatttgatcgttatttggatttaatttattggtccagaaaaccatatttcttataaaaaatcaaaattatcttt |
24422477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 25 - 273
Target Start/End: Complemental strand, 24469638 - 24469394
Alignment:
| Q |
25 |
gcaggtgtatttcaaattagtatatcctttgtcttttagatagaagaattggcaagcatgattgagagcccaagtgtgaaacttatgataaagtcaaatt |
124 |
Q |
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| T |
24469638 |
gcaggtgtatttcaaattagtatatcctttggcttttagagagaagaattggcaagcatgattgagaactcaagtgtgaaacatttgataaagtcaaatt |
24469539 |
T |
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| Q |
125 |
aattccaaatttgccataattctctcatgttcaaatggaataaaatatatgtaaaagaagtaagtagtacatttaatccaaatttggactaaatacatat |
224 |
Q |
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| T |
24469538 |
aatttccatttttacagaattttctaatgatcaattgaaataaaatatacgtaaaaga----agtagtgcatttaatcaaaatttggactaaatacatat |
24469443 |
T |
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| Q |
225 |
acagttttgcttatgatacatgtaatatggagtgatgcatatcattttt |
273 |
Q |
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| T |
24469442 |
acagttttgcttatgatacatgtaatatggagtgatgcatcttattttt |
24469394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 269 - 421
Target Start/End: Complemental strand, 24469363 - 24469214
Alignment:
| Q |
269 |
tttttaattttcaaagtaatttaagtgagaatgtagtgtatttgatcgtaatttggatttaatttattgttcaagaaaaccatatttctttttaaaaaa- |
367 |
Q |
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| T |
24469363 |
tttttaattttcaatgtaatttaaatgggaa-----tgtatttgatcgaaatttggatttaatttattggtcaagaaaaccatatttctttataaaaaag |
24469269 |
T |
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| Q |
368 |
-caaattatctttcatgctataactttgcgtcactattgtcaatgaattaataaa |
421 |
Q |
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||| ||||||| |||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
24469268 |
caaaagtatcttttatgctatagctttgtgtcactattttcaatgaattaataaa |
24469214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 24406887 - 24406959
Alignment:
| Q |
69 |
agaattggcaagcatgattgagagcc-caagtgtgaaacttatgataaagtcaaattaattccaaatttgcca |
140 |
Q |
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| T |
24406887 |
agaactggcaagcatgattgagaacatcaagtgtgaaacaattgataaagtcaaattaattcaaaacttgcca |
24406959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 24478344 - 24478401
Alignment:
| Q |
369 |
aaattatctttcatgctataacttt-gcgtcactattgtcaatgaattaataaactac |
425 |
Q |
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||||||| ||| ||||||||||||| | | ||||||||||||||||||||||| |||| |
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| T |
24478344 |
aaattatgttttatgctataacttttgtgccactattgtcaatgaattaataagctac |
24478401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 3898 - 3663
Alignment:
| Q |
25 |
gcaggtgtatttcaaattagtatatcctttgtcttttagatagaagaattggcaagcatgattgagagcccaagtgtgaaacttatgataaagtcaaatt |
124 |
Q |
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| T |
3898 |
gcaggtgtatttcaaattagtatatcctttggcttttagagagaagaattggcaagcatgattgagaactcaagtgtgaaacatttgataaagtcaaatt |
3799 |
T |
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| Q |
125 |
aattccaaatttgccataattctctcatgttcaaatggaataaaatatatgtaaaagaagtaagtagtacatttaatccaaatttggactaaatacatat |
224 |
Q |
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| T |
3798 |
aatttccatttttacagaattttctaatgatcaattgaaataaaatatacgtaaaaga----agtagtgcatttaatcaaaatttggactaaatacatat |
3703 |
T |
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| Q |
225 |
acagttttgcttatgatacatgtaatatggagtgatgcat |
264 |
Q |
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| T |
3702 |
acagttttgcttatgatacatgtaatatggagtgatgcat |
3663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 265 - 421
Target Start/End: Complemental strand, 3630 - 3477
Alignment:
| Q |
265 |
atcatttttaattttcaaagtaatttaagtgagaatgtagtgtatttgatcgtaatttggatttaatttattgttcaagaaaaccatatttctttttaaa |
364 |
Q |
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|||||||||||||||||| ||||||||| || ||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
3630 |
atcatttttaattttcaatgtaatttaaatgggaa-----tgtatttgatcgaaatttggatttaatttattggtcaagaaaaccatatttctttataaa |
3536 |
T |
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| Q |
365 |
aaa--caaattatctttcatgctataactttgcgtcactattgtcaatgaattaataaa |
421 |
Q |
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||| ||| ||||||| |||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
3535 |
aaagcaaaagtatcttttatgctatagctttgtgtcactattttcaatgaattaataaa |
3477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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