View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11866_high_8 (Length: 449)
Name: NF11866_high_8
Description: NF11866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11866_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 203 - 439
Target Start/End: Complemental strand, 53121301 - 53121060
Alignment:
| Q |
203 |
ttaaattaatataaataacatttatgtgctat---gtattgacccactgtctagtaactcttatacgattacaaacgtaacatattacttttatacaccg |
299 |
Q |
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| T |
53121301 |
ttaaattaatataaataacatttatgtgctattatgtattaacccactgtctag--actcttatacgattacaaacgtaacatattacttttatacaccg |
53121204 |
T |
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| Q |
300 |
tcttttaaaagaacagaaatgttgtgtcatgaaaaacatcacaaatgcattccgagtgaaatgacaagtttaaagtcaatcatatt----aattcaataa |
395 |
Q |
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| T |
53121203 |
tcttttaaaagaacagaaatgttgtgtcatgaaaaacatcacaaatgcattccgagtgaaatgacaagtttaaagtcaatcatattaattaattcaataa |
53121104 |
T |
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| Q |
396 |
tcatccgtgtatggttagccatgctctttattggctactttcat |
439 |
Q |
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| T |
53121103 |
ccatccgtgtatggttagccatgctctttattggctactttcat |
53121060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 53122723 - 53122531
Alignment:
| Q |
19 |
tccttagcctccaaggaaccaaaaggacattggagaaagcttccacaactaacttagaatcacattctaacaaaacaaaactccaattcctgtcccttag |
118 |
Q |
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| T |
53122723 |
tccttagcctccaaggaaccaaaaggacattgtagaaagattccgcaactaacttagaatcacattctaacaaaacaaaactccaattcctgtcccttat |
53122624 |
T |
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| Q |
119 |
ccatcttaaatccctcatccccgcaacaagctcatcatattcatacaaagaagattgaataccatattaagagtaaaagatgtattaaattaa |
211 |
Q |
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| T |
53122623 |
ccatcttaaatccctcatccccgcaacaagctcatcatattcatacaaagaagattgaataccaaaataagagtaaaagatgtattaaattaa |
53122531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 30244553 - 30244633
Alignment:
| Q |
26 |
cctccaaggaaccaaaaggacattggagaaagcttccacaactaacttagaatcacattctaacaaaacaaaactccaatt |
106 |
Q |
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| T |
30244553 |
cctccaagaaactagaagaacattggagaaagcttccacaactagccttgaataacattctatccaaacaaagttccaatt |
30244633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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