View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11866_low_1 (Length: 862)

Name: NF11866_low_1
Description: NF11866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11866_low_1
NF11866_low_1
[»] scaffold0044 (2 HSPs)
scaffold0044 (347-854)||(56906-57416)
scaffold0044 (15-290)||(56606-56884)


Alignment Details
Target: scaffold0044 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 347 - 854
Target Start/End: Original strand, 56906 - 57416
Alignment:
Q  347 ttttacaagattaattactatggtacaaaacatatcaattaagttattacttaatctttgtgcaaataccaaaattatcgaagtttaggaataccaataa 446  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  56906 ttttgcaaggttaattactatggtacaaaacatatcaattaagttattacttaatctttgtgcaaataccaaaattatcaaagtttaggaataccaataa 57005  T
Q  447 ctgctatataaaacataattacaagtgaacgcaactaatatcataggacaatcaata---ataatagcaataataacacatcccatctcaatccctcaac 543  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||||||    
T  57006 ctgctatataaaacataattacaagtgaacgcaactaatatcataggacaatcaataataataatagcaataataacacatcccatctcattccctcaac 57105  T
Q  544 taaatactttgtatcctaaatccggtacatcccaaaacgtttaaccaatgactaatcactatcgcagaactttcaaccaatgattaatcactatcactgg 643  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  57106 taaatactttgtatcctaaatccggtacatcccaaaacgtttaaccaatgactaatcactatcgcagaactttcaaccaatgattaatcactatcgctcg 57205  T
Q  644 accaaaaagctgcttcactacccttggccatattttctaaaatgtaaccccttttatattatattttgccaactttaccctctccccagatgcacaaatt 743  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||    
T  57206 accaaaaagctgcttcactacccttggccatattttctaaaatgtaaccccttttatattatatttggccaattttaccctctcccgagatgcacaaatt 57305  T
Q  744 cggacgagattagtctggatgtatacatccataccggatttgtccggatgtatctagatgcatacatccagaccaatctcatccgcatttaggcatctac 843  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  57306 cggactagattagtctggatgtatacatccataccggatttgtccggatgtatctagatgcatacatccagaccaatctcatccgcatttaggcatctac 57405  T
Q  844 aacttcatctc 854  Q
    |||||||||||    
T  57406 aacttcatctc 57416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 56606 - 56884
Alignment:
Q  15 acatcagaaaaaggaattttttcatataaattgaggcgaatacaacaagcagtgaagacagataaagtgagagatatgattgagaattaagaaagacctt 114  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56606 acatcagaaaaaggaaatttttcatataaattgaggcgaatacaacaagcagtgaagacagataaagtgagagatatgattgagaattaagaaagacctt 56705  T
Q  115 aaaaatcgaggag-gaaaaatacgcggttgtaacttgtaatcac-aaaacaaacatagaaaccagcaattaatttt-ccagccgtattccatttcagcac 211  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  56706 aaaaatcgaggagagaaaaatacgcggttgtaacttgtaatcacaaaaaaaaacatagaaaccagcaattaattttaccagccatattccatttcagcac 56805  T
Q  212 aaatctagagatattttcactgaaataatttagctataacataacatactcaattccaaaactttggtagtttaagcat 290  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  56806 aaatctagagatattttcactgaaataatttagctatgacataacatactcaattccaaaactttggtagtttaagcat 56884  T

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