View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11866_low_10 (Length: 446)
Name: NF11866_low_10
Description: NF11866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11866_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 20 - 429
Target Start/End: Original strand, 31048787 - 31049188
Alignment:
| Q |
20 |
gtagggcattgcactagttggaacttggaagattattgatcatgaatatgtgtttttcagaaggattaatgtactaaacctatcatgtttgtatccaaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31048787 |
gtagggcattgcactagttggaacttggaagattattgatcatgaatatgtgtttttcagaaggattaatgtactaaacctatcatgtttgtatccagca |
31048886 |
T |
|
| Q |
120 |
tgagagagggctatgtttgttgggttacgagggagtatcatgattactcacatgaggacaaaaacaataatagatgatagtataatttaaaccaaatttt |
219 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31048887 |
t--gagagggctatatttgttgggttacgagggagtatcatgattactcacatcaggacaaaaacaataatagatgatagtatatcttaaaccaaatttt |
31048984 |
T |
|
| Q |
220 |
cgagagattaggtttacgagtcatcttacttatactttggtcagccttaattttttcaaacaaagagagatttacaattcacgtcctatatactattcaa |
319 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31048985 |
tgagatattaagtttacgag-catcttacttataccttggtcaaccttaattttt----ccaaagagagatttacaattcacgccctatatactattcaa |
31049079 |
T |
|
| Q |
320 |
tannnnnnnnnggaacaatcagagacttctaactcatacttgcaacataaaaacttcctcccgcaagtatgagtacattccattcatcgctaatgctccc |
419 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31049080 |
ta-tttttttcggaacaatcagagatttctaactcatacttgcaacataaaaacttcctcccgcaagtatgagtacattccattcatcgctaatgctccc |
31049178 |
T |
|
| Q |
420 |
tcacaaacga |
429 |
Q |
| |
|
|||||||||| |
|
|
| T |
31049179 |
tcacaaacga |
31049188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University