View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11866_low_11 (Length: 444)
Name: NF11866_low_11
Description: NF11866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11866_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 42022156 - 42022033
Alignment:
| Q |
18 |
agtgtagttatcacgtacgtaaaagaatgatcatattcatttcaactagttaattaagcagcatggagtacaaaaccaaaacgcattcataaatagatcg |
117 |
Q |
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| T |
42022156 |
agtgtagttatcacgtacgtaaaagatt---catattcatttcaactagttaattaagcagcatggagtacaaaaccaaaacgcattcataaatagatcg |
42022060 |
T |
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| Q |
118 |
ttgatttagattaaagggccctgcata |
144 |
Q |
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|||||||||||| |||||||||||||| |
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| T |
42022059 |
ttgatttagattgaagggccctgcata |
42022033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 349 - 444
Target Start/End: Complemental strand, 42021814 - 42021719
Alignment:
| Q |
349 |
tcccaagaaattaaacagaaagatagaatcaaccagggcttttacatccacatatcaacaaagagaatccaattctatcttgttccttttgtttct |
444 |
Q |
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|||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42021814 |
tcccaagaaattaaacagaaagatagaatcaatcagggttcttacatccacatatcaacaaagagaatccaattctatcttgttccttttgtttct |
42021719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 42021946 - 42021873
Alignment:
| Q |
221 |
taggttaattgtaacagtacatgtaattacatta----gaattaccttaaaatctgccagcatcccattacatt |
290 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
42021946 |
taggttaattgtaacagtacatgtaattacattacaattaattaccttaaaatctgcctgcatcccattacatt |
42021873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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