View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11866_low_12 (Length: 434)

Name: NF11866_low_12
Description: NF11866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11866_low_12
NF11866_low_12
[»] chr2 (13 HSPs)
chr2 (1-201)||(8921357-8921557)
chr2 (227-370)||(39819087-39819230)
chr2 (227-370)||(12918557-12918700)
chr2 (211-370)||(15562212-15562371)
chr2 (209-336)||(7755342-7755469)
chr2 (209-358)||(13421692-13421841)
chr2 (203-283)||(34563326-34563406)
chr2 (374-414)||(8921552-8921592)
chr2 (230-270)||(18182591-18182631)
chr2 (312-363)||(39819060-39819112)
chr2 (326-370)||(12918498-12918543)
chr2 (202-239)||(12918663-12918700)
chr2 (202-239)||(39819193-39819230)
[»] chr7 (14 HSPs)
chr7 (209-368)||(17272705-17272864)
chr7 (214-345)||(29681776-29681906)
chr7 (209-282)||(7211866-7211939)
chr7 (219-312)||(7211947-7212040)
chr7 (230-370)||(43500011-43500148)
chr7 (220-283)||(25099327-25099390)
chr7 (209-285)||(46282874-46282951)
chr7 (209-257)||(32315713-32315761)
chr7 (220-270)||(32315790-32315840)
chr7 (209-282)||(4911698-4911771)
chr7 (230-270)||(6980948-6980988)
chr7 (230-270)||(42494799-42494839)
chr7 (206-260)||(29407496-29407550)
chr7 (202-239)||(29681903-29681940)
[»] chr3 (23 HSPs)
chr3 (209-370)||(11512393-11512554)
chr3 (209-370)||(22893891-22894051)
chr3 (219-336)||(31342023-31342140)
chr3 (235-336)||(20286936-20287037)
chr3 (221-283)||(36738279-36738341)
chr3 (227-267)||(17546997-17547037)
chr3 (201-257)||(48342785-48342841)
chr3 (209-260)||(29081700-29081751)
chr3 (305-361)||(29081598-29081655)
chr3 (203-260)||(32385358-32385415)
chr3 (230-283)||(32385436-32385489)
chr3 (221-257)||(48342320-48342356)
chr3 (229-272)||(29081625-29081668)
chr3 (241-271)||(16205747-16205777)
chr3 (222-284)||(20496553-20496614)
chr3 (201-239)||(22893890-22893928)
chr3 (202-260)||(31342108-31342165)
chr3 (326-371)||(25790897-25790942)
chr3 (326-363)||(49159502-49159539)
chr3 (206-238)||(5633181-5633213)
chr3 (334-366)||(5633181-5633213)
chr3 (199-239)||(11512517-11512557)
chr3 (200-260)||(36738362-36738422)
[»] chr1 (25 HSPs)
chr1 (208-371)||(50754729-50754892)
chr1 (209-370)||(28739304-28739465)
chr1 (227-370)||(9379842-9379985)
chr1 (209-370)||(28045325-28045486)
chr1 (227-370)||(9884865-9885008)
chr1 (227-327)||(6539593-6539693)
chr1 (235-337)||(15928097-15928200)
chr1 (298-370)||(44381908-44381981)
chr1 (201-260)||(10449446-10449505)
chr1 (303-370)||(35251165-35251234)
chr1 (303-366)||(49200058-49200122)
chr1 (230-370)||(10449447-10449579)
chr1 (216-260)||(28810061-28810105)
chr1 (202-257)||(44801751-44801806)
chr1 (202-260)||(44938794-44938852)
chr1 (227-264)||(4579192-4579229)
chr1 (201-239)||(28045449-28045487)
chr1 (201-239)||(28739303-28739341)
chr1 (201-239)||(44381907-44381945)
chr1 (241-283)||(44938872-44938914)
chr1 (235-272)||(719023-719060)
chr1 (326-363)||(6539683-6539720)
chr1 (244-285)||(49199994-49200035)
chr1 (202-239)||(50754854-50754891)
chr1 (202-254)||(593824-593876)
[»] chr6 (12 HSPs)
chr6 (209-370)||(2543735-2543895)
chr6 (209-370)||(11448063-11448224)
chr6 (202-282)||(369498-369578)
chr6 (202-260)||(16193830-16193888)
chr6 (230-370)||(16193757-16193888)
chr6 (202-259)||(28581731-28581788)
chr6 (214-270)||(2980786-2980842)
chr6 (219-280)||(35049754-35049816)
chr6 (202-239)||(11448187-11448224)
chr6 (201-239)||(2543734-2543772)
chr6 (230-283)||(28581810-28581863)
chr6 (229-285)||(1879187-1879243)
[»] chr4 (22 HSPs)
chr4 (227-370)||(31846782-31846925)
chr4 (229-336)||(6607420-6607527)
chr4 (228-370)||(31012152-31012294)
chr4 (229-354)||(6608375-6608500)
chr4 (293-369)||(2254622-2254698)
chr4 (219-279)||(54223569-54223629)
chr4 (209-283)||(11392307-11392379)
chr4 (297-363)||(46321429-46321496)
chr4 (202-260)||(36273058-36273116)
chr4 (219-269)||(38324924-38324974)
chr4 (219-280)||(41306689-41306750)
chr4 (227-284)||(43063542-43063599)
chr4 (212-260)||(30023646-30023694)
chr4 (303-368)||(32008336-32008402)
chr4 (206-260)||(33380606-33380660)
chr4 (206-256)||(53261093-53261143)
chr4 (229-270)||(9712943-9712984)
chr4 (230-270)||(22435379-22435419)
chr4 (314-368)||(15031965-15032020)
chr4 (312-363)||(31846900-31846952)
chr4 (209-257)||(40789263-40789311)
chr4 (312-363)||(54613030-54613082)
[»] chr5 (20 HSPs)
chr5 (209-370)||(5215560-5215722)
chr5 (209-343)||(9177863-9177997)
chr5 (227-343)||(29385303-29385419)
chr5 (227-354)||(19417469-19417595)
chr5 (235-371)||(36568736-36568872)
chr5 (235-285)||(1840003-1840053)
chr5 (211-283)||(23219360-23219432)
chr5 (202-284)||(896268-896350)
chr5 (219-342)||(25879328-25879447)
chr5 (219-272)||(42772054-42772107)
chr5 (222-285)||(31848177-31848239)
chr5 (304-364)||(7137637-7137698)
chr5 (227-283)||(7137665-7137721)
chr5 (202-246)||(41287997-41288041)
chr5 (201-256)||(12605660-12605715)
chr5 (312-363)||(29385394-29385446)
chr5 (232-271)||(5998620-5998659)
chr5 (235-265)||(37325634-37325664)
chr5 (333-371)||(41288004-41288042)
chr5 (326-363)||(19417442-19417479)
[»] chr8 (11 HSPs)
chr8 (229-370)||(43465112-43465256)
chr8 (230-371)||(31470771-31470914)
chr8 (298-370)||(16687512-16687585)
chr8 (326-370)||(1605038-1605082)
chr8 (202-259)||(4531845-4531902)
chr8 (230-334)||(7931550-7931655)
chr8 (201-239)||(16687511-16687549)
chr8 (230-280)||(33763539-33763589)
chr8 (227-260)||(31470845-31470878)
chr8 (219-256)||(45051343-45051380)
chr8 (206-250)||(33763461-33763505)
[»] scaffold0343 (2 HSPs)
scaffold0343 (326-371)||(12225-12270)
scaffold0343 (230-283)||(12285-12338)
[»] scaffold1315 (1 HSPs)
scaffold1315 (209-260)||(1819-1870)
[»] scaffold1293 (1 HSPs)
scaffold1293 (209-260)||(201-252)
[»] scaffold0001 (1 HSPs)
scaffold0001 (227-285)||(507740-507798)
[»] scaffold0110 (1 HSPs)
scaffold0110 (203-260)||(26500-26557)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 8921357 - 8921557
Alignment:
Q  1 catacacctttgttttggctagtagacaataaacaattactaaagtgtatatatccacattgttatttaagatttactttctgtttcttcatggttttgt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8921357 catacacctttgttttagctagtagacaataaacaattactaaagtgtatatatccacattgttatttaagatttactttctgtttcttcatggttttgt 8921456  T
Q  101 agcttagaaagatacaacaatttttggtcgnnnnnnnngatagcacatagtttagcatactttatatagctagattgtcaatgactagatatagtaacag 200  Q
    ||||||||||||||||||| ||| ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8921457 agcttagaaagatacaacattttatggtcgaaaaaaaagatagcacatagtttagcatactttatatagctagattgtcaatgactagatatagtaacag 8921556  T
Q  201 g 201  Q
    |    
T  8921557 g 8921557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 227 - 370
Target Start/End: Original strand, 39819087 - 39819230
Alignment:
Q  227 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 326  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||||||    
T  39819087 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaatattgtggttggta 39819186  T
Q  327 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  39819187 atgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 39819230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 227 - 370
Target Start/End: Original strand, 12918557 - 12918700
Alignment:
Q  227 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 326  Q
    ||||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||       ||||||||||||| ||||||||||||||||||||    
T  12918557 ttggtgacattggccaaccacaatgtcacatgtggcttttttctttttctttcataagacttttttgttgttttgcacatttgtaacattgtggttggta 12918656  T
Q  327 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  12918657 atgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 12918700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 211 - 370
Target Start/End: Original strand, 15562212 - 15562371
Alignment:
Q  211 ttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgt 310  Q
    ||||||| ||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||  |||||  ||       ||||||||||||||||||    
T  15562212 ttgggtgacattgtggttgatgacattggccaaccacaatgtcacatgtgactttcttcttttttattcactggatttttttgttgttttgcacacttgt 15562311  T
Q  311 aacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    ||||||||| |||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  15562312 aacattgtgattggtaatgtcaccaatatcaccaaccataatgtcacccaaatattatcc 15562371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 7755342 - 7755469
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 308  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||       ||||||||| ||||||    
T  7755342 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacaagtggcttttttctttttctttaacaagatttttttgttgttttgtacactt 7755441  T
Q  309 gtaacattgtggttggtaatgtcaccaa 336  Q
    ||||||||||| ||||||||||||||||    
T  7755442 gtaacattgtgattggtaatgtcaccaa 7755469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 358
Target Start/End: Complemental strand, 13421841 - 13421692
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 308  Q
    ||||||||| ||||||||||||||| |||| |||||||||| || ||| ||| ||||||| ||||||||| || |||       ||||||||  ||| ||    
T  13421841 acttgggtgacattgtggttggtgacattgaccaaccacaacgttacatgtgactttcttttttttcttttacgagatttttttgttgttttatacattt 13421742  T
Q  309 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacc 358  Q
    | |||||| |  ||| |||||||| |||| |||||||| || ||||||||    
T  13421741 gaaacattataattgataatgtcatcaatgtcaccaaccacgatgtcacc 13421692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 283
Target Start/End: Complemental strand, 34563406 - 34563326
Alignment:
Q  203 gataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 283  Q
    |||||||||| |||| ||| ||||||||||| |||| |||||  |||||||||||||  |||||||| |||||||||||||    
T  34563406 gataatactttggtgacatcgtggttggtgacattgaccaacttcaatgtcacaagtatctttcttcattttctttcacaa 34563326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 8921552 - 8921592
Alignment:
Q  374 aacaggtaaactaattattggtaaggttctttgcttgcttg 414  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  8921552 aacaggtaaactaattattggcaaggttctttgcttgcttg 8921592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 18182631 - 18182591
Alignment:
Q  230 gtgatattggccaaccacaatgtcacaagtggctttcttct 270  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  18182631 gtgacattggcaaaccacaatgtcacaagtggctttcttct 18182591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 363
Target Start/End: Complemental strand, 39819112 - 39819060
Alignment:
Q  312 acattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 363  Q
    |||||||||||||  |||||||||||| |||||||| ||||||||||||||||    
T  39819112 acattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagt 39819060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 370
Target Start/End: Complemental strand, 12918543 - 12918498
Alignment:
Q  326 aatgtcaccaatatcaccaacgacaatgtcaccc-aagtattatcc 370  Q
    |||||||||||| |||||||| |||||||||||| |||||||||||    
T  12918543 aatgtcaccaatgtcaccaaccacaatgtcacccaaagtattatcc 12918498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 12918700 - 12918663
Alignment:
Q  202 ggataatacttgggtggcattgtggttggtgatattgg 239  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  12918700 ggataatacttgggtgacattgtggttggtgacattgg 12918663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 39819230 - 39819193
Alignment:
Q  202 ggataatacttgggtggcattgtggttggtgatattgg 239  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  39819230 ggataatacttgggtgacattgtggttggtgacattgg 39819193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 209 - 368
Target Start/End: Original strand, 17272705 - 17272864
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 308  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||    
T  17272705 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacactt 17272804  T
Q  309 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattat 368  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  17272805 gtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattat 17272864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 214 - 345
Target Start/End: Original strand, 29681776 - 29681906
Alignment:
Q  214 ggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaac 313  Q
    |||| ||||||||||||||| ||||||||||||||| |||||| |||||||| || ||||| ||| ||||||       |||||||| ||||||||||||    
T  29681776 ggtgacattgtggttggtgacattggccaaccacaacgtcacatgtggctttttttttttttttt-acaagatatttttgttgttttacacacttgtaac 29681874  T
Q  314 attgtggttggtaatgtcaccaatatcaccaa 345  Q
    |||||||||||||||||||||||| |||||||    
T  29681875 attgtggttggtaatgtcaccaatgtcaccaa 29681906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 7211866 - 7211939
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcaca 282  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  7211866 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcaca 7211939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 7212040 - 7211947
Alignment:
Q  219 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaa 312  Q
    ||||||||| || || |||||||||||||||||||||| ||| ||||||||||||||||||||||||       ||||||||||||||||||||    
T  7212040 cattgtggtgggagacattggccaaccacaatgtcacatgtgactttcttctttttctttcacaagatttttttgttgttttgcacacttgtaa 7211947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 370
Target Start/End: Original strand, 43500011 - 43500148
Alignment:
Q  230 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatg 329  Q
    |||||||||| ||| ||||||||||||  || | ||||||||||||||||||||         ||||||||| ||  |||||||||||||||||||||||    
T  43500011 gtgatattggtcaatcacaatgtcacatatgacattcttctttttctttcacaa--tttttttgttgttttgtact-ttgtaacattgtggttggtaatg 43500107  T
Q  330 tcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    ||||||||||||||||| ||||| || ||||| ||||||||    
T  43500108 tcaccaatatcaccaaccacaatatcgcccaaatattatcc 43500148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 220 - 283
Target Start/End: Complemental strand, 25099390 - 25099327
Alignment:
Q  220 attgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 283  Q
    ||||||||||||||  |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  25099390 attgtggttggtgactttggtcaaccacaatgtcacaagtgtctttcttctttttctttcacaa 25099327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 46282874 - 46282951
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtgg-ctttcttctttttctttcacaaga 285  Q
    ||||| ||| |||||| |||||||| |||||||||||||||| ||||||||||  |||||||||| ||||||||||||    
T  46282874 acttgagtgacattgtagttggtgacattggccaaccacaatatcacaagtggtttttcttctttctctttcacaaga 46282951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 32315713 - 32315761
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaa 257  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||    
T  32315713 acttgcgtgacattgtggttggtgacattggccaaccacaatgtcacaa 32315761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 32315840 - 32315790
Alignment:
Q  220 attgtggttggtgatattggccaaccacaatgtcacaagtggctttcttct 270  Q
    |||||||||||||| ||||| |||| ||||||||| |||||||||||||||    
T  32315840 attgtggttggtgacattggtcaactacaatgtcagaagtggctttcttct 32315790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 4911771 - 4911698
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcaca 282  Q
    ||||||||| ||||||| | ||||||||||| |||| | ||||||||| |||  |||||||||| |||||||||    
T  4911771 acttgggtgacattgtgatcggtgatattggtcaactataatgtcacaggtgaatttcttctttctctttcaca 4911698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 6980988 - 6980948
Alignment:
Q  230 gtgatattggccaaccacaatgtcacaagtggctttcttct 270  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  6980988 gtgacattggccaaccacaatgttacaagtggctttcttct 6980948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 42494799 - 42494839
Alignment:
Q  230 gtgatattggccaaccacaatgtcacaagtggctttcttct 270  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  42494799 gtgacattggcaaaccacaatgtcacaagtggctttcttct 42494839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 29407496 - 29407550
Alignment:
Q  206 aatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 260  Q
    ||||||||||||  ||||| || |||||||||||||||| ||||||||| |||||    
T  29407496 aatacttgggtgatattgtcgtcggtgatattggccaactacaatgtcataagtg 29407550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 29681940 - 29681903
Alignment:
Q  202 ggataatacttgggtggcattgtggttggtgatattgg 239  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  29681940 ggataatacttgggtgacattgtggttggtgacattgg 29681903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 209 - 370
Target Start/End: Original strand, 11512393 - 11512554
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 308  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||       | ||||||||||||||    
T  11512393 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgatgttttgcacactt 11512492  T
Q  309 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    ||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||    
T  11512493 gtaacattgtggttggtaatgtcaccaatgtcaccaaccataatgtcacccaagtattatcc 11512554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 209 - 370
Target Start/End: Complemental strand, 22894051 - 22893891
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 308  Q
    ||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||       ||||||||| ||||||    
T  22894051 acttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgactttcttctttttctttaacaagatttttt-gttgttttgtacactt 22893953  T
Q  309 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  22893952 gtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 22893891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 219 - 336
Target Start/End: Original strand, 31342023 - 31342140
Alignment:
Q  219 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgt 318  Q
    ||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  31342023 cattgtggttggtgacattggccaaccacaatgtcacatgtagctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgt 31342122  T
Q  319 ggttggtaatgtcaccaa 336  Q
    ||||||||||||||||||    
T  31342123 ggttggtaatgtcaccaa 31342140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 235 - 336
Target Start/End: Original strand, 20286936 - 20287037
Alignment:
Q  235 attggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatgtcacc 334  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  20286936 attggccaaccacaatgtcacatgtggctttcttctttttcttttacaagacttttttgttgttttgcacacttgtaacattgtggttggtaatgtcacc 20287035  T
Q  335 aa 336  Q
    ||    
T  20287036 aa 20287037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 36738279 - 36738341
Alignment:
Q  221 ttgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 283  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||||||| | ||||||||    
T  36738279 ttgtggttggtgatattggtcaaccacaatatcacaagtgtctttcttctttctttttcacaa 36738341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 17546997 - 17547037
Alignment:
Q  227 ttggtgatattggccaaccacaatgtcacaagtggctttct 267  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  17546997 ttggtgatattggccaaccataatgtcacaagtggctttct 17547037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 48342785 - 48342841
Alignment:
Q  201 gggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaa 257  Q
    ||||||||||||||||| |||| ||||||| || ||||| |||||||||||||||||    
T  48342785 gggataatacttgggtgacattatggttggcgacattggtcaaccacaatgtcacaa 48342841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 29081751 - 29081700
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 260  Q
    |||||||||  |||||||||||||| ||||| ||||||||||||||||||||    
T  29081751 acttgggtgatattgtggttggtgacattggtcaaccacaatgtcacaagtg 29081700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 29081655 - 29081598
Alignment:
Q  305 acttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaa 361  Q
    |||||| |||||||||||||| ||||||||| || |||||||| ||||||||||||||    
T  29081655 acttgtgacattgtggttggtcaatgtcaccgatgtcaccaaccacaatgtcacccaa 29081598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 32385358 - 32385415
Alignment:
Q  203 gataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 260  Q
    ||||||| ||||||| ||||||| ||||||| ||||| |||||||||||| |||||||    
T  32385358 gataatatttgggtgacattgtgattggtgacattggtcaaccacaatgtgacaagtg 32385415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 32385489 - 32385436
Alignment:
Q  230 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 283  Q
    ||||||||||||||||||||||| | |||||  |||||||||| ||||||||||    
T  32385489 gtgatattggccaaccacaatgttaaaagtgtttttcttctttctctttcacaa 32385436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 48342356 - 48342320
Alignment:
Q  221 ttgtggttggtgatattggccaaccacaatgtcacaa 257  Q
    ||||||| |||||||||||||||||||||||||||||    
T  48342356 ttgtggtcggtgatattggccaaccacaatgtcacaa 48342320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 29081625 - 29081668
Alignment:
Q  229 ggtgatattggccaaccacaatgtcacaagtggctttcttcttt 272  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||    
T  29081625 ggtgacattgaccaaccacaatgtcacaagtagctttcttcttt 29081668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 16205747 - 16205777
Alignment:
Q  241 caaccacaatgtcacaagtggctttcttctt 271  Q
    |||||||||||||||||||||||||||||||    
T  16205747 caaccacaatgtcacaagtggctttcttctt 16205777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 20496614 - 20496553
Alignment:
Q  222 tgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaag 284  Q
    |||||||||||| |||| | ||||||||||||||| ||| ||||||||| | |||||||||||    
T  20496614 tgtggttggtgacattgtc-aaccacaatgtcacacgtgactttcttctctctctttcacaag 20496553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 22893890 - 22893928
Alignment:
Q  201 gggataatacttgggtggcattgtggttggtgatattgg 239  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  22893890 gggataatacttgggtgacattgtggttggtgacattgg 22893928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 31342165 - 31342108
Alignment:
Q  202 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 260  Q
    |||||||| ||||||| ||||||||||||||| |||  ||||||||||||| |||||||    
T  31342165 ggataatatttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtg 31342108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 371
Target Start/End: Original strand, 25790897 - 25790942
Alignment:
Q  326 aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcca 371  Q
    |||||||||||| |||||||| | |||||||||||| |||||||||    
T  25790897 aatgtcaccaatgtcaccaaccataatgtcacccaaatattatcca 25790942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 49159502 - 49159539
Alignment:
Q  326 aatgtcaccaatatcaccaacgacaatgtcacccaagt 363  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  49159502 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 49159539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 5633213 - 5633181
Alignment:
Q  206 aatacttgggtggcattgtggttggtgatattg 238  Q
    |||||||||||| ||||||||||||||||||||    
T  5633213 aatacttgggtgacattgtggttggtgatattg 5633181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 5633181 - 5633213
Alignment:
Q  334 caatatcaccaacgacaatgtcacccaagtatt 366  Q
    ||||||||||||| |||||||||||||||||||    
T  5633181 caatatcaccaaccacaatgtcacccaagtatt 5633213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 11512557 - 11512517
Alignment:
Q  199 aggggataatacttgggtggcattgtggttggtgatattgg 239  Q
    ||||||||||||||||||| |||| |||||||||| |||||    
T  11512557 aggggataatacttgggtgacattatggttggtgacattgg 11512517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 36738422 - 36738362
Alignment:
Q  200 ggggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 260  Q
    ||||| |||| ||||||| ||||||||||||||| ||||| |||| ||||| ||| |||||    
T  36738422 ggggaaaatatttgggtgacattgtggttggtgacattggtcaactacaatatcataagtg 36738362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 208 - 371
Target Start/End: Original strand, 50754729 - 50754892
Alignment:
Q  208 tacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacact 307  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||       |||||||||||||||    
T  50754729 tactttggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagatttttttgttgttttgcacact 50754828  T
Q  308 tgtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcca 371  Q
    |||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  50754829 tgtaacattgtggttgataatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcca 50754892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 209 - 370
Target Start/End: Complemental strand, 28739465 - 28739304
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 308  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| ||||||       ||| ||||||||||||    
T  28739465 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttttttctttttcttttacaagatttttttgttattttgcacactt 28739366  T
Q  309 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  28739365 gtaacattgtggttggtaatgtcaccaatatcaccaaccacaatatcacccaagtattatcc 28739304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 227 - 370
Target Start/End: Original strand, 9379842 - 9379985
Alignment:
Q  227 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 326  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  9379842 ttggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggta 9379941  T
Q  327 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    |||| |||||| |||||||| |||||||||||||| ||||||||    
T  9379942 atgttaccaatgtcaccaaccacaatgtcacccaaatattatcc 9379985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 209 - 370
Target Start/End: Original strand, 28045325 - 28045486
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngtt-gttttgcacact 307  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||        || |||||| |||||    
T  28045325 acttgggtgacattgtggttggtga-attggccaaccataatgtcacaagtggctttcttctttttctttaacaagattttcttttttgttttgtacact 28045423  T
Q  308 tgtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  28045424 tgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 28045486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 227 - 370
Target Start/End: Original strand, 9884865 - 9885008
Alignment:
Q  227 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 326  Q
    ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||    
T  9884865 ttggtgacattggtcaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttgata 9884964  T
Q  327 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    ||||||| ||| |||||||| ||||| |||||||||||| ||||    
T  9884965 atgtcacgaatgtcaccaaccacaatatcacccaagtatcatcc 9885008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 6539693 - 6539593
Alignment:
Q  227 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 326  Q
    ||||||| ||||| |||||||||||||||| ||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  6539693 ttggtgacattggtcaaccacaatgtcacatgtgactttcttctttttctttcacaagacttttttgttgttttgcacacttgtaacattgtggttggta 6539594  T
Q  327 a 327  Q
    |    
T  6539593 a 6539593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 15928200 - 15928097
Alignment:
Q  235 attggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga-nnnnnnngttgttttgcacacttgtaacattgtggttggtaatgtcac 333  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||| |||||||||    
T  15928200 attggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttgttgttgttttgtacacttgtaacattgtggttgataatgtcac 15928101  T
Q  334 caat 337  Q
    ||||    
T  15928100 caat 15928097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 370
Target Start/End: Complemental strand, 44381981 - 44381908
Alignment:
Q  298 tttgcacacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    |||| |||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  44381981 tttgtacacgtgtaacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcacccaaatattatcc 44381908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 10449446 - 10449505
Alignment:
Q  201 gggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 260  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  10449446 gggataatacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtg 10449505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 370
Target Start/End: Complemental strand, 35251234 - 35251165
Alignment:
Q  303 acacttgtaacattgtggttggtaatgtcaccaatatcaccaacgaca--atgtcacccaagtattatcc 370  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |  |||||| |||||||||||||    
T  35251234 acacttgtaacattgtggttggtaatgtcaccaatatcaccaaccatatcatgtcatccaagtattatcc 35251165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 366
Target Start/End: Original strand, 49200058 - 49200122
Alignment:
Q  303 acacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagtatt 366  Q
    |||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||||| |||||||    
T  49200058 acacttgtgacattgtggttggtcaatgtcatcaatatcaccaaccacaatgtcacctaagtatt 49200122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 370
Target Start/End: Complemental strand, 10449579 - 10449447
Alignment:
Q  230 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatg 329  Q
    |||| ||||| ||||||||||||||||| |  ||||||||||| |||||||||| |       |||  |||| |||||||| ||||||||||||||        
T  10449579 gtgacattggtcaaccacaatgtcacaaatatctttcttctttctctttcacaatatttttttgtttctttgtacacttgtgacattgtggttggt---- 10449484  T
Q  330 tcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
        |||| |||||||| |||||||||||||||||||||||    
T  10449483 ----caatgtcaccaaccacaatgtcacccaagtattatcc 10449447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 28810105 - 28810061
Alignment:
Q  216 tggcattgtggttggtgatattggccaaccacaatgtcacaagtg 260  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  28810105 tggcattgtggttggtgacattggtcaaccacaatgtcacaagtg 28810061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 44801751 - 44801806
Alignment:
Q  202 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaa 257  Q
    ||||||||||| ||||  |||||||||| ||| |||||||||||||||||||||||    
T  44801751 ggataatacttaggtgatattgtggttgatgacattggccaaccacaatgtcacaa 44801806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 44938794 - 44938852
Alignment:
Q  202 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 260  Q
    |||||| ||||||||| |||||||||| |||| |||| ||||||| |||||||||||||    
T  44938794 ggataacacttgggtgacattgtggttagtgacattgaccaaccagaatgtcacaagtg 44938852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 4579192 - 4579229
Alignment:
Q  227 ttggtgatattggccaaccacaatgtcacaagtggctt 264  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  4579192 ttggtgacattggccaaccacaatgtcacaagtggctt 4579229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 28045487 - 28045449
Alignment:
Q  201 gggataatacttgggtggcattgtggttggtgatattgg 239  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  28045487 gggataatacttgggtgacattgtggttggtgacattgg 28045449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 28739303 - 28739341
Alignment:
Q  201 gggataatacttgggtggcattgtggttggtgatattgg 239  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  28739303 gggataatacttgggtgatattgtggttggtgatattgg 28739341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 44381907 - 44381945
Alignment:
Q  201 gggataatacttgggtggcattgtggttggtgatattgg 239  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  44381907 gggataatatttgggtgacattgtggttggtgatattgg 44381945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 44938914 - 44938872
Alignment:
Q  241 caaccacaatgtcacaagtggctttcttctttttctttcacaa 283  Q
    |||||||||||  ||||||||||||||||||| ||||||||||    
T  44938914 caaccacaatggtacaagtggctttcttctttctctttcacaa 44938872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 719023 - 719060
Alignment:
Q  235 attggccaaccacaatgtcacaagtggctttcttcttt 272  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  719023 attggacaaccacaatgtcacaagtggcttttttcttt 719060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 6539683 - 6539720
Alignment:
Q  326 aatgtcaccaatatcaccaacgacaatgtcacccaagt 363  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  6539683 aatgtcaccaatatcatcaaccacaatgtcacccaagt 6539720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 49199994 - 49200035
Alignment:
Q  244 ccacaatgtcacaagtggctttcttctttttctttcacaaga 285  Q
    ||||||||||||||||| |||| |||||||||||||| ||||    
T  49199994 ccacaatgtcacaagtgacttttttctttttctttcataaga 49200035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 50754891 - 50754854
Alignment:
Q  202 ggataatacttgggtggcattgtggttggtgatattgg 239  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  50754891 ggataatacttgggtgacattgtggttggtgacattgg 50754854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 593876 - 593824
Alignment:
Q  202 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtca 254  Q
    |||||||||||||||| |||| | |||||| |||||||  |||||||||||||    
T  593876 ggataatacttgggtgacattatagttggtaatattggttaaccacaatgtca 593824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 209 - 370
Target Start/End: Complemental strand, 2543895 - 2543735
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 308  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| || |||||||||||||| |       |||||||| |||||||    
T  2543895 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttttttttttttctttcacaa-atttttttgttgttttacacactt 2543797  T
Q  309 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  2543796 gtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 2543735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 209 - 370
Target Start/End: Original strand, 11448063 - 11448224
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 308  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| | | || ||||| |||||||||||||||||         ||||||||||||||||    
T  11448063 acttgggtgacattgtggttggtaatattggccaaccacaatgttatatgtagcttttttctttttctttcacaaattttttttgttgttttgcacactt 11448162  T
Q  309 gtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11448163 ataacattgtggttggtaatgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 11448224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 369578 - 369498
Alignment:
Q  202 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcaca 282  Q
    |||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||    
T  369578 ggataatacttgagtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtctttcttctttctctttcaca 369498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 16193888 - 16193830
Alignment:
Q  202 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 260  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  16193888 ggataatacttgggtgacattgtggttggtgacattggtcaaccacaatgtcacaagtg 16193830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 370
Target Start/End: Original strand, 16193757 - 16193888
Alignment:
Q  230 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatg 329  Q
    |||||||||||||| |||||||||||||||| ||||||||||| || ||||||| |        | |||||| |||||||| ||||||||||||          
T  16193757 gtgatattggccaatcacaatgtcacaagtgtctttcttctttctccttcacaatattttttt-tagttttgtacacttgtgacattgtggttg------ 16193849  T
Q  330 tcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
      |||||| |||||||| |||||||||||||||||||||||    
T  16193850 --accaatgtcaccaaccacaatgtcacccaagtattatcc 16193888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 28581731 - 28581788
Alignment:
Q  202 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagt 259  Q
    ||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||    
T  28581731 ggataatacttggctgacattgtggttggtgacattggccaaccacaatgtcataagt 28581788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 2980842 - 2980786
Alignment:
Q  214 ggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttct 270  Q
    |||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  2980842 ggtgacattgtggttggtgaaattggtcaaccataatgtcacaagtggctttcttct 2980786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 35049754 - 35049816
Alignment:
Q  219 cattgtggttggtgatattggccaaccacaatgtcacaagtggc-tttcttctttttctttca 280  Q
    ||||| |||||||||| ||| ||||||||||| | ||||||||| ||||||||||||||||||    
T  35049754 cattgcggttggtgatgttgaccaaccacaatattacaagtggcttttcttctttttctttca 35049816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 11448224 - 11448187
Alignment:
Q  202 ggataatacttgggtggcattgtggttggtgatattgg 239  Q
    |||||||||||||||| |||||||||||||||||||||    
T  11448224 ggataatacttgggtgacattgtggttggtgatattgg 11448187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 2543734 - 2543772
Alignment:
Q  201 gggataatacttgggtggcattgtggttggtgatattgg 239  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  2543734 gggataatacttgggtgacattgtggttggtgacattgg 2543772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 28581863 - 28581810
Alignment:
Q  230 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 283  Q
    ||||||||| |||||  |||| ||||||||| ||||||||||| ||||||||||    
T  28581863 gtgatattgaccaacatcaatatcacaagtgtctttcttctttctctttcacaa 28581810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 1879187 - 1879243
Alignment:
Q  229 ggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga 285  Q
    ||||| ||||| |||||||||||||| ||||| ||||||||| | | ||||||||||    
T  1879187 ggtgacattggtcaaccacaatgtcataagtgactttcttctctatttttcacaaga 1879243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 227 - 370
Target Start/End: Complemental strand, 31846925 - 31846782
Alignment:
Q  227 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 326  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||||||    
T  31846925 ttggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattttggttggta 31846826  T
Q  327 atgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    ||||||| ||| |||||||| | |||||||||||||||||||||    
T  31846825 atgtcacgaatgtcaccaaccataatgtcacccaagtattatcc 31846782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 229 - 336
Target Start/End: Complemental strand, 6607527 - 6607420
Alignment:
Q  229 ggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaat 328  Q
    ||||| |||| ||||||| ||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  6607527 ggtgacattgaccaaccataatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggtaat 6607428  T
Q  329 gtcaccaa 336  Q
    ||||||||    
T  6607427 gtcaccaa 6607420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 228 - 370
Target Start/End: Original strand, 31012152 - 31012294
Alignment:
Q  228 tggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaa 327  Q
    |||||| |||| ||||||||||||||||| ||| |||| |||||||||||||||||         ||||||||||| |||||||| ||||||||||||||    
T  31012152 tggtgacattgaccaaccacaatgtcacatgtgacttttttctttttctttcacaatttttttttgttgttttgcatacttgtaatattgtggttggtaa 31012251  T
Q  328 tgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    |||||| ||| |||||||| ||||||||||| |||||||||||    
T  31012252 tgtcactaatgtcaccaaccacaatgtcacctaagtattatcc 31012294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 229 - 354
Target Start/End: Original strand, 6608375 - 6608500
Alignment:
Q  229 ggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnn-gttgttttgcacacttgtaacattgtggttggtaa 327  Q
    ||||| |||||||||||| ||||||||| ||||||| ||||||||||||||| ||||        ||||||||||| |||||||||||||||||||||||    
T  6608375 ggtgacattggccaaccataatgtcacacgtggcttccttctttttctttca-aagattctttttgttgttttgcagacttgtaacattgtggttggtaa 6608473  T
Q  328 tgtcaccaatatcaccaacgacaatgt 354  Q
    |||||||||| |||||||| |||||||    
T  6608474 tgtcaccaatgtcaccaaccacaatgt 6608500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 2254622 - 2254698
Alignment:
Q  293 gttgttttgcacacttgtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatc 369  Q
    ||||||||| ||||||||||||||||| |||||||| ||| |||| |||| ||| ||||||||||  ||||||||||    
T  2254622 gttgttttgtacacttgtaacattgtgattggtaatatcatcaatgtcacgaaccacaatgtcacataagtattatc 2254698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 54223569 - 54223629
Alignment:
Q  219 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttc 279  Q
    ||||||||||||||| |||| |||||||||||||||||| || ||||||||||| ||||||    
T  54223569 cattgtggttggtgacattgaccaaccacaatgtcacaaatgtctttcttctttctctttc 54223629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 11392307 - 11392379
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 283  Q
    ||||||||| ||||||||||| ||| ||||||| |||||||||||||||  ||||||||||| | ||||||||||    
T  11392307 acttgggtgacattgtggttgatgaaattggcctaccacaatgtcacaa--ggctttcttctctctctttcacaa 11392379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 46321429 - 46321496
Alignment:
Q  297 ttttgcacacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 363  Q
    ||||| ||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||| |||||    
T  46321429 ttttgtacagttgtgacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcactcaagt 46321496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 36273116 - 36273058
Alignment:
Q  202 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 260  Q
    |||||| ||||||||| ||||||||| |||||||||| ||||||||||| |||||||||    
T  36273116 ggataacacttgggtgacattgtggtcggtgatattgaccaaccacaatatcacaagtg 36273058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 38324974 - 38324924
Alignment:
Q  219 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttc 269  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  38324974 cattgtggttggtgatattggccaaccataatatcacatgtggctttcttc 38324924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 41306750 - 41306689
Alignment:
Q  219 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttca 280  Q
    |||||||||||||||||||| ||||||| |||||||||| ||  |||||||| |||||||||    
T  41306750 cattgtggttggtgatattgaccaaccataatgtcacaaatgtatttcttctctttctttca 41306689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 43063542 - 43063599
Alignment:
Q  227 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaag 284  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||  |||||||||||||    
T  43063542 ttggtgacattagccaaccacaatgtcacaagtggctttcatcactttctttcacaag 43063599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 30023694 - 30023646
Alignment:
Q  212 tgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 260  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  30023694 tgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtg 30023646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 32008336 - 32008402
Alignment:
Q  303 acacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagtattat 368  Q
    |||||||||||||| |||||||| ||| |||| ||| |||||||| |||||||||||||||| ||||    
T  32008336 acacttgtaacattttggttggtcaatatcactaatgtcaccaaccacaatgtcacccaagtgttat 32008402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 33380606 - 33380660
Alignment:
Q  206 aatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 260  Q
    ||||||| | || ||||||||||||||||||||| |||||||||||| |||||||    
T  33380606 aatacttagatgacattgtggttggtgatattggtcaaccacaatgtaacaagtg 33380660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 53261093 - 53261143
Alignment:
Q  206 aatacttgggtggcattgtggttggtgatattggccaaccacaatgtcaca 256  Q
    ||||||| |||| ||||||||||||||| |||| |||||||||||||||||    
T  53261093 aatacttaggtgacattgtggttggtgacattgaccaaccacaatgtcaca 53261143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 9712984 - 9712943
Alignment:
Q  229 ggtgatattggccaaccacaatgtcacaagtggctttcttct 270  Q
    ||||| |||| |||||||||||||||||||||||||||||||    
T  9712984 ggtgacattgaccaaccacaatgtcacaagtggctttcttct 9712943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 22435379 - 22435419
Alignment:
Q  230 gtgatattggccaaccacaatgtcacaagtggctttcttct 270  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  22435379 gtgacattggcaaaccacaatgtcacaagtggctttcttct 22435419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 15032020 - 15031965
Alignment:
Q  314 attgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagtattat 368  Q
    |||||||||||| |||||||| ||||||| |||| |||||||||||||||| ||||    
T  15032020 attgtggttggtcaatgtcacgaatatcatcaaccacaatgtcacccaagtgttat 15031965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 31846900 - 31846952
Alignment:
Q  312 acattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 363  Q
    |||||||||||||  ||| |||||||| |||||||| ||||||||||||||||    
T  31846900 acattgtggttggccaatatcaccaatgtcaccaaccacaatgtcacccaagt 31846952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 40789311 - 40789263
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaa 257  Q
    ||||||||| ||| | | ||||||||||||||||| |||||||||||||    
T  40789311 acttgggtgacatagagtttggtgatattggccaatcacaatgtcacaa 40789263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 363
Target Start/End: Complemental strand, 54613082 - 54613030
Alignment:
Q  312 acattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 363  Q
    |||||||||||||| |||| ||| ||| |||||||| ||||||||||||||||    
T  54613082 acattgtggttggtcaatgccactaatgtcaccaaccacaatgtcacccaagt 54613030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 209 - 370
Target Start/End: Complemental strand, 5215722 - 5215560
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggcttt-cttctttttctttcacaagannnnnnngttgttttgcacact 307  Q
    ||||||||| ||||||||||| ||| ||||| |||||||||| ||||| |||||||| ||| ||||||||||||||||       ||||||||| |||||    
T  5215722 acttgggtgacattgtggttgatgacattggtcaaccacaatatcacatgtggcttttcttatttttctttcacaagattttgttgttgttttgtacact 5215623  T
Q  308 tgtaacattgtggttggtaatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    |||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||    
T  5215622 tgtaacattgtggttggtaatgtcaccaatgttaccaaccacaatgtcacccaagtattatcc 5215560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 209 - 343
Target Start/End: Complemental strand, 9177997 - 9177863
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacactt 308  Q
    |||||| || |||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |        |||||||||||||||    
T  9177997 acttggatgacattgtggttggtgatattggccaaccacaatatcacatgtgactttcttctttttctttcacaatatttttttattgttttgcacactt 9177898  T
Q  309 gtaacattgtggttggtaatgtcaccaatatcacc 343  Q
     ||||||||||||||||| ||||| |||| |||||    
T  9177897 ataacattgtggttggtagtgtcatcaatgtcacc 9177863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 227 - 343
Target Start/End: Complemental strand, 29385419 - 29385303
Alignment:
Q  227 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 326  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||| | |||       ||||||||||||||||||||||||||||||||||    
T  29385419 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcgctagatttttttgttgttttgcacacttgtaacattgtggttggta 29385320  T
Q  327 atgtcaccaatatcacc 343  Q
    || |||| ||| |||||    
T  29385319 atatcactaatgtcacc 29385303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 227 - 354
Target Start/End: Original strand, 19417469 - 19417595
Alignment:
Q  227 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggta 326  Q
    ||||||| ||||| |||| ||||||||||| ||| |||||||  |||||||||||||||       ||||||||||||||||| ||||||||||||||||    
T  19417469 ttggtgacattggtcaactacaatgtcacatgtgactttctttcttttctttcacaagatttttttgttgttttgcacacttg-aacattgtggttggta 19417567  T
Q  327 atgtcaccaatatcaccaacgacaatgt 354  Q
    ||||||||||| |||||||| |||||||    
T  19417568 atgtcaccaatgtcaccaaccacaatgt 19417595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 235 - 371
Target Start/End: Original strand, 36568736 - 36568872
Alignment:
Q  235 attggccaaccacaa-tgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggtaatgtcac 333  Q
    ||||| ||||||||| ||||||| |||||||||||| ||||||||||||| |       ||||||||| ||||||||||||||||||||| | |||||||    
T  36568736 attggtcaaccacaaatgtcacatgtggctttcttccttttctttcacaatatttttt-gttgttttgtacacttgtaacattgtggttgattatgtcac 36568834  T
Q  334 caatatcaccaacgacaatgtcacccaagtattatcca 371  Q
     ||| |||||||| ||||||||||  ||||||||||||    
T  36568835 taatgtcaccaaccacaatgtcacataagtattatcca 36568872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 285
Target Start/End: Original strand, 1840003 - 1840053
Alignment:
Q  235 attggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga 285  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1840003 attggccaaccacaatgtcacatgtggctttcttctttttctttcacaaga 1840053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 283
Target Start/End: Complemental strand, 23219432 - 23219360
Alignment:
Q  211 ttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 283  Q
    ||||||| |||||||||||||||  ||||||||||||||||||| |  || ||||||||||||||||||||||    
T  23219432 ttgggtgacattgtggttggtgaccttggccaaccacaatgtcatatatgactttcttctttttctttcacaa 23219360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 896268 - 896350
Alignment:
Q  202 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaag 284  Q
    |||||| |||||||||  |||||||||||||||||||  |||||||||||||||| | || |||||||||| ||||| |||||    
T  896268 ggataacacttgggtgagattgtggttggtgatattgatcaaccacaatgtcacaggcggttttcttctttctcttttacaag 896350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 342
Target Start/End: Complemental strand, 25879447 - 25879328
Alignment:
Q  219 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgt 318  Q
    ||||||||||||||||||| |||||||||||||||||| |||  |||    |||||   ||||||||        |||||||  ||||||||||||||||    
T  25879447 cattgtggttggtgatattagccaaccacaatgtcacatgtgatttt----ttttttcgtcacaagacttttttattgttttatacacttgtaacattgt 25879352  T
Q  319 ggttggtaatgtcaccaatatcac 342  Q
    ||||| ||||||||||||||||||    
T  25879351 ggttgataatgtcaccaatatcac 25879328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 42772107 - 42772054
Alignment:
Q  219 cattgtggttggtgatattggccaaccacaatgtcacaagtggctttcttcttt 272  Q
    ||||||||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  42772107 cattgtggttggtgacattgaccaaccacaatgtcacaagtgtctttcttcttt 42772054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 31848177 - 31848239
Alignment:
Q  222 tgtggttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga 285  Q
    ||||||||||||||||| |||||||||| ||||||||||| |||||||| | ||||||||||||    
T  31848177 tgtggttggtgatattgaccaaccacaaggtcacaagtgg-tttcttctctctctttcacaaga 31848239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 7137698 - 7137637
Alignment:
Q  304 cacttgtaacattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagta 364  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||  ||||||||||||||||    
T  7137698 cacttgtgacattgtggttggtcaatgtcaccaatttcaccaactgcaatgtcacccaagta 7137637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 7137665 - 7137721
Alignment:
Q  227 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 283  Q
    ||||||| |||| ||||||||||||||||||||| |||||||| || ||||||||||    
T  7137665 ttggtgacattgaccaaccacaatgtcacaagtgactttcttcattctctttcacaa 7137721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 41288041 - 41287997
Alignment:
Q  202 ggataatacttgggtggcattgtggttggtgatattggccaacca 246  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||    
T  41288041 ggataatatttgggtgacattgtggttggtgatattggccaacca 41287997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 12605715 - 12605660
Alignment:
Q  201 gggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcaca 256  Q
    ||||||||||||  ||| ||||||||||||||| ||||| ||||||||||||||||    
T  12605715 gggataatacttaagtgacattgtggttggtgacattggtcaaccacaatgtcaca 12605660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 29385394 - 29385446
Alignment:
Q  312 acattgtggttggt-aatgtcaccaatatcaccaacgacaatgtcacccaagt 363  Q
    |||||||||||||  |||||||||||| |||||||| ||||||||||||||||    
T  29385394 acattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagt 29385446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 5998659 - 5998620
Alignment:
Q  232 gatattggccaaccacaatgtcacaagtggctttcttctt 271  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  5998659 gatattggccaaccacaatatcacaagtgactttcttctt 5998620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 37325664 - 37325634
Alignment:
Q  235 attggccaaccacaatgtcacaagtggcttt 265  Q
    |||||||||||||||||||||||||||||||    
T  37325664 attggccaaccacaatgtcacaagtggcttt 37325634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 41288004 - 41288042
Alignment:
Q  333 ccaatatcaccaacgacaatgtcacccaagtattatcca 371  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  41288004 ccaatatcaccaaccacaatgtcacccaaatattatcca 41288042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 19417479 - 19417442
Alignment:
Q  326 aatgtcaccaatatcaccaacgacaatgtcacccaagt 363  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  19417479 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 19417442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 229 - 370
Target Start/End: Original strand, 43465112 - 43465256
Alignment:
Q  229 ggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacatt---gtggttggt 325  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||||       ||||||||||||||||||||||||   |||||||||    
T  43465112 ggtgacattggccaaccacaatatcacatgtggctttcttctttttttttcacaagatttttttgttgttttgcacacttgtaacattgtggtggttggt 43465211  T
Q  326 aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    ||| |||||||| |||||||| | ||||||| |||||||||||||    
T  43465212 aatttcaccaatgtcaccaaccagaatgtcatccaagtattatcc 43465256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 230 - 371
Target Start/End: Original strand, 31470771 - 31470914
Alignment:
Q  230 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggt-aat 328  Q
    |||| |||| ||||||||||||||||||||  | |||||||||||||||||||| |       |||  |||| |||||||| |||||||||||||  |||    
T  31470771 gtgacattgaccaaccacaatgtcacaagtatcattcttctttttctttcacaatatttttttgtttctttgtacacttgtgacattgtggttggccaat 31470870  T
Q  329 gtcaccaatatcaccaacgacaatgtca-cccaagtattatcca 371  Q
    |||||||||| ||||||| ||||| ||| |||||||||||||||    
T  31470871 gtcaccaataccaccaaccacaatatcaccccaagtattatcca 31470914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 370
Target Start/End: Complemental strand, 16687585 - 16687512
Alignment:
Q  298 tttgcacacttgtaacattgtggttgg-taatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    |||| |||||||  ||||||||||| | |||||||||||||||||||||| ||||||||| |||||||||||||    
T  16687585 tttgtacacttgggacattgtggttagctaatgtcaccaatatcaccaaccacaatgtcatccaagtattatcc 16687512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 1605038 - 1605082
Alignment:
Q  326 aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcc 370  Q
    |||||||||||| |||||||| |||||||||||||||||||||||    
T  1605038 aatgtcaccaatgtcaccaactacaatgtcacccaagtattatcc 1605082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 4531902 - 4531845
Alignment:
Q  202 ggataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagt 259  Q
    |||||| |||| | || |||||| ||||||||||||| ||||||||||||||||||||    
T  4531902 ggataaaacttagatgacattgtagttggtgatattgaccaaccacaatgtcacaagt 4531845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 334
Target Start/End: Complemental strand, 7931655 - 7931550
Alignment:
Q  230 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaagannnnnnngttgttttgcacacttgtaacattgtggttggt-aat 328  Q
    |||| |||||| |||||||||||||||| || ||||||||||| ||||||| || |       |||  |||| |||||||| |||||||||||||| |||    
T  7931655 gtgacattggcaaaccacaatgtcacaaatgtctttcttctttctctttcataatatttttttgtttctttgtacacttgtgacattgtggttggtcaat 7931556  T
Q  329 gtcacc 334  Q
    ||||||    
T  7931555 gtcacc 7931550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 16687511 - 16687549
Alignment:
Q  201 gggataatacttgggtggcattgtggttggtgatattgg 239  Q
    |||||||||||||| || |||||||||||||||||||||    
T  16687511 gggataatacttggatgacattgtggttggtgatattgg 16687549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 33763589 - 33763539
Alignment:
Q  230 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttca 280  Q
    |||| ||||| |||| ||||| ||||||||| |||||||||||||||||||    
T  33763589 gtgacattggtcaactacaatatcacaagtgcctttcttctttttctttca 33763539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 260
Target Start/End: Complemental strand, 31470878 - 31470845
Alignment:
Q  227 ttggtgatattggccaaccacaatgtcacaagtg 260  Q
    ||||||| ||||||||||||||||||||||||||    
T  31470878 ttggtgacattggccaaccacaatgtcacaagtg 31470845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 45051380 - 45051343
Alignment:
Q  219 cattgtggttggtgatattggccaaccacaatgtcaca 256  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  45051380 cattgtggttggtgacattggccgaccacaatgtcaca 45051343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 33763461 - 33763505
Alignment:
Q  206 aatacttgggtggcattgtggttggtgatattggccaaccacaat 250  Q
    |||| ||||||| ||||||||||||||| ||||| ||||||||||    
T  33763461 aataattgggtgacattgtggttggtgacattggtcaaccacaat 33763505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 12270 - 12225
Alignment:
Q  326 aatgtcaccaatatcaccaacgacaatgtcacccaagtattatcca 371  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||    
T  12270 aatgtcatcaatgtcaccaactacaatgtcacccaagtattatcca 12225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 12338 - 12285
Alignment:
Q  230 gtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaa 283  Q
    |||| |||| ||||||||||||||||||||| | ||||||||| ||||||||||    
T  12338 gtgacattgaccaaccacaatgtcacaagtgtccttcttctttctctttcacaa 12285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 1819 - 1870
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 260  Q
    ||||||||| ||||||||||||||| ||||  |||||||||| |||||||||    
T  1819 acttgggtgacattgtggttggtgacattgatcaaccacaatatcacaagtg 1870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 252 - 201
Alignment:
Q  209 acttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 260  Q
    ||||||||| ||||||||||||||| ||||  |||||||||| |||||||||    
T  252 acttgggtgacattgtggttggtgacattgatcaaccacaatatcacaagtg 201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 507740 - 507798
Alignment:
Q  227 ttggtgatattggccaaccacaatgtcacaagtggctttcttctttttctttcacaaga 285  Q
    ||||||| |||| |||| |||||| | |||||||| |||||||||| ||||||||||||    
T  507740 ttggtgacattgaccaatcacaatattacaagtggatttcttctttctctttcacaaga 507798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 26500 - 26557
Alignment:
Q  203 gataatacttgggtggcattgtggttggtgatattggccaaccacaatgtcacaagtg 260  Q
    ||||||||||  ||| ||||||||||||||| ||||| ||| |||||| |||||||||    
T  26500 gataatacttatgtgacattgtggttggtgacattggtcaaacacaatatcacaagtg 26557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University