View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11866_low_15 (Length: 384)

Name: NF11866_low_15
Description: NF11866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11866_low_15
NF11866_low_15
[»] chr2 (3 HSPs)
chr2 (20-369)||(5118092-5118441)
chr2 (20-369)||(5100533-5100882)
chr2 (52-369)||(5081136-5081453)
[»] chr6 (1 HSPs)
chr6 (20-365)||(14413409-14413754)
[»] chr3 (1 HSPs)
chr3 (52-369)||(16884805-16885122)
[»] chr8 (12 HSPs)
chr8 (52-188)||(25312382-25312518)
chr8 (51-205)||(25716575-25716729)
chr8 (52-205)||(25652681-25652834)
chr8 (60-243)||(25454373-25454556)
chr8 (55-180)||(25324042-25324167)
chr8 (55-180)||(25392678-25392803)
chr8 (52-188)||(24874005-24874141)
chr8 (52-188)||(25342363-25342499)
chr8 (52-188)||(25571266-25571402)
chr8 (60-243)||(22899296-22899479)
chr8 (55-157)||(25696746-25696848)
chr8 (279-339)||(22899200-22899260)
[»] scaffold0070 (1 HSPs)
scaffold0070 (52-188)||(35625-35761)
[»] scaffold1415 (1 HSPs)
scaffold1415 (60-217)||(427-584)
[»] chr4 (1 HSPs)
chr4 (275-322)||(10325450-10325497)


Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 5118441 - 5118092
Alignment:
Q  20 agaggttaacccgttggattctaagtaaagcattctaagtgaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatac 119  Q
    |||||||||||  || ||| ||| || || | ||||||| |||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||    
T  5118441 agaggttaacctattagatcctatgtgaaactttctaagagaagtcatatttcccaaacatgttggtaacactccagaaagcttattgcttgataaatac 5118342  T
Q  120 aatacactcaaactcttaatttcacaaagctcatcaatcatggatccttgcagtccattgtaaccaagatctaaatattgaagtttatgtaaccctttaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5118341 aatacactcaaactcttaatttcacaaagctcatcaatcatggatccttgcagtccattgtaaccaagatctaaatattgaagtttatgtaaccctttaa 5118242  T
Q  220 ttacaccagggattgatccatttaaatcattatgccacaaagataatcgaatcaggttgctcatgtttccaatttctagtggaatatttccattaattcc 319  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||||||||  ||||||||||||||||||||| |||||||    
T  5118241 ttacaccagggattgatccatttaaatcattatccctcaaagataatccaataaggttgctcatgtttctgatttctagtggaatatttccaataattcc 5118142  T
Q  320 acaagaatttgcccaaaagtgttctacggataagtttccaatggacttgg 369  Q
    |||||| | ||||  |||||||||||||||||||||||||||||||||||    
T  5118141 acaagattctgcctgaaagtgttctacggataagtttccaatggacttgg 5118092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 5100882 - 5100533
Alignment:
Q  20 agaggttaacccgttggattctaagtaaagcattctaagtgaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatac 119  Q
    |||||||||||  || ||| ||| || || | ||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||   |||  |    
T  5100882 agaggttaacctattagatcctatgtgaaactttctaagagaagtcatatttcccaaacatgttggtaacactccaaaaagcttattgcttgtcaaaccc 5100783  T
Q  120 aatacactcaaactcttaatttcacaaagctcatcaatcatggatccttgcagtccattgtaaccaagatctaaatattgaagtttatgtaaccctttaa 219  Q
    ||  ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||  ||| ||||||||||||||||||||||||    
T  5100782 aactcactcaaactcctaatttcacaaagctcatcaatcatggatccttgcagcccattgtagccaagattcaaagattgaagtttatgtaaccctttaa 5100683  T
Q  220 ttacaccagggattgatccatttaaatcattatgccacaaagataatcgaatcaggttgctcatgtttccaatttctagtggaatatttccattaattcc 319  Q
    ||  || |||||||| ||||||||||  |||    | || ||||||| |||||| |||||| |||||||| |||||||  ||||||||||||||||||||    
T  5100682 ttgtactagggattgctccatttaaactattgcttctcagagataattgaatcaagttgcttatgtttccgatttctacaggaatatttccattaattcc 5100583  T
Q  320 acaagaatttgcccaaaagtgttctacggataagtttccaatggacttgg 369  Q
    |||||||| |||| ||||||||||||| |||||||||  |||||||||||    
T  5100582 acaagaatctgccaaaaagtgttctacagataagtttgtaatggacttgg 5100533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 52 - 369
Target Start/End: Original strand, 5081136 - 5081453
Alignment:
Q  52 ttctaagtgaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatacaatacactcaaactcttaatttcacaaagctc 151  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||  ||||| |||  ||||||||||| |||| |||||||||||    
T  5081136 ttctaagagaagtcatatttcccaaacatgtcggtaacactcctacaagcttattgcttgttaaattcaactcactcaaactcgtaatgtcacaaagctc 5081235  T
Q  152 atcaatcatggatccttgcagtccattgtaaccaagatctaaatattgaagtttatgtaaccctttaattacaccagggattgatccatttaaatcatta 251  Q
    |||||| ||||||||||||||  |||||||  ||||||| ||| | |||||||| |||||||||||||        ||||| |||||||||| ||  ||     
T  5081236 atcaatgatggatccttgcaggtcattgtagtcaagatccaaagactgaagtttttgtaaccctttaacagtctttgggatcgatccatttatattgttc 5081335  T
Q  252 tgccacaaagataatcgaatcaggttgctcatgtttccaatttctagtggaatatttccattaattccacaagaatttgcccaaaagtgttctacggata 351  Q
       |  | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||  | ||    
T  5081336 ctactaagagataatcgaatcaggttgctcatgtttccgatttctagtggaatatttccattcattccacaagaatttgcccaaaagtgttctaaagtta 5081435  T
Q  352 agtttccaatggacttgg 369  Q
    ||||||||||||||||||    
T  5081436 agtttccaatggacttgg 5081453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 14413409 - 14413754
Alignment:
Q  20 agaggttaacccgttggattctaagtaaagcattctaagtgaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatac 119  Q
    ||||||||||| ||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||     
T  14413409 agaggttaacctgttagatcctaagtaaagctttctaagtgaagtcatatttcccaaacatgttggtaacactccaaaaagcttattgcttattaaatat 14413508  T
Q  120 aatacactcaaactcttaatttcacaaagctcatcaatcatggatccttgcagtccattgtaaccaagatctaaatattgaagtttatgtaaccctttaa 219  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| ||||||||||||||||||||||||    
T  14413509 aactcactcaaactcttaatttcacaaagctcatcaatcatggatccttgtagtctattgtaaccaagttctaaagattgaagtttatgtaaccctttaa 14413608  T
Q  220 ttacaccagggattgatccatttaaatcattatgccacaaagataatcgaatcaggttgctcatgtttccaatttctagtggaatatttccattaattcc 319  Q
    ||  ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  14413609 ttgaaccagggattgatccatttaaatcattatcccacaaagataatctaatcaggttgctcatgtttccagtttcaagtggaatatttccattaattcc 14413708  T
Q  320 acaagaatttgcccaaaagtgttctacggataagtttccaatggac 365  Q
    |||||||| ||||||||||| |||||  ||||||||||||||||||    
T  14413709 acaagaatctgcccaaaagtattctaaagataagtttccaatggac 14413754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 52 - 369
Target Start/End: Complemental strand, 16885122 - 16884805
Alignment:
Q  52 ttctaagtgaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatacaatacactcaaactcttaatttcacaaagctc 151  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||| | |||||||||||||  |||  ||||  |||  |||||| ||| ||| |||| |||    
T  16885122 ttctaagagaactcatatttcccaagcatgttggtaacactccgaaaagcttattgcttgttaaggacaactcacctaaactcctaagttcgcaaacctc 16885023  T
Q  152 atcaatcatggatccttgcagtccattgtaaccaagatctaaatattgaagtttatgtaaccctttaattacaccagggattgatccatttaaatcatta 251  Q
     | ||| |||||||||||||||||||| |   |||| |  ||| | ||||| |||||||| |||||||||  |  |||||||  |||||||| ||||||     
T  16885022 gttaatgatggatccttgcagtccattatggtcaagtttcaaagactgaagcttatgtaaacctttaattgtagtagggattagtccatttagatcattg 16884923  T
Q  252 tgccacaaagataatcgaatcaggttgctcatgtttccaatttctagtggaatatttccattaattccacaagaatttgcccaaaagtgttctacggata 351  Q
    | || || |||||| ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  16884922 ttcctcagagataagcgaatcaggttgctcatatttccgatttctagtggaatatttccactaattccacaagaatttgcccaaaagttttctacagata 16884823  T
Q  352 agtttccaatggacttgg 369  Q
    ||||||||||||||||||    
T  16884822 agtttccaatggacttgg 16884805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 52 - 188
Target Start/End: Original strand, 25312382 - 25312518
Alignment:
Q  52 ttctaagtgaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatacaatacactcaaactcttaatttcacaaagctc 151  Q
    ||||||| ||||||||||||||||||||||||||||| |||||   |||||||||  ||  || ||||||| ||| ||||||||| |||||||||| |||    
T  25312382 ttctaagagaagtcatatttcccaaacatgttggtaaaactccagaaagcttattattttctagatacaattcacccaaactcttcatttcacaaaactc 25312481  T
Q  152 atcaatcatggatccttgcagtccattgtaaccaaga 188  Q
     ||||| |  |||||||| ||| ||||||| ||||||    
T  25312482 ttcaataaatgatccttggagttcattgtagccaaga 25312518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 205
Target Start/End: Original strand, 25716575 - 25716729
Alignment:
Q  51 attctaagtgaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatacaatacactcaaactcttaatttcacaaagct 150  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    ||||||||  ||   | ||||||  ||| ||||||||| |||||||||| ||    
T  25716575 attctaagagaagtcatatttcccaaacatgttggtaaaactccagagagcttattattttccagatacaactcacccaaactcttcatttcacaaaact 25716674  T
Q  151 catcaatcatggatccttgcagtccattgtaaccaagatctaaatattgaagttt 205  Q
    | ||||| |  |||||||| ||||||||||  |||||||  ||||| ||||||||    
T  25716675 cttcaataaatgatccttgtagtccattgttgccaagattcaaatactgaagttt 25716729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 52 - 205
Target Start/End: Original strand, 25652681 - 25652834
Alignment:
Q  52 ttctaagtgaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatacaatacactcaaactcttaatttcacaaagctc 151  Q
    ||||||| ||| |||||||||||| |||||||||||| |||||    ||||||||  ||  || ||||||  ||| ||||||||| ||||||||||| ||    
T  25652681 ttctaagagaaatcatatttcccatacatgttggtaaaactccagagagcttattattttgtagatacaactcacccaaactcttcatttcacaaagttc 25652780  T
Q  152 atcaatcatggatccttgcagtccattgtaaccaagatctaaatattgaagttt 205  Q
     ||||| |  |||||||| ||||||||||  |||||||  ||||| ||||||||    
T  25652781 ctcaataaatgatccttgtagtccattgttgccaagattcaaatactgaagttt 25652834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 243
Target Start/End: Original strand, 25454373 - 25454556
Alignment:
Q  60 gaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatacaatacactcaaactcttaatttcacaaagctcatcaatca 159  Q
    ||||||||||||||||||||||||||||| |||||    ||||||||  |   || ||||||  ||| ||||||||| |||||||||| ||| ||||| |    
T  25454373 gaagtcatatttcccaaacatgttggtaaaactccagagagcttattattgtctagatacaactcacccaaactcttcatttcacaaaactcttcaataa 25454472  T
Q  160 tggatccttgcagtccattgtaaccaagatctaaatattgaagtttatgtaaccctttaattacaccagggattgatccattta 243  Q
      |||||||| |||||||||   | |||||| ||||| |||| ||| || |||||||| | |  |||||| |||| ||||||||    
T  25454473 atgatccttgtagtccattgctgctaagatccaaatactgaaatttctgcaaccctttgaatgtaccaggtattggtccattta 25454556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 25324042 - 25324167
Alignment:
Q  55 taagtgaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatacaatacactcaaactcttaatttcacaaagctcatc 154  Q
    |||| ||| ||||||||||||||||||||||||| |||||    ||||||||  ||  || ||||||  ||| ||||||||| ||||||||||| || ||    
T  25324042 taagagaaatcatatttcccaaacatgttggtaaaactccagagagcttattattttgtagatacaactcacccaaactcttcatttcacaaagttcctc 25324141  T
Q  155 aatcatggatccttgcagtccattgt 180  Q
    ||| |  |||||||| ||||||||||    
T  25324142 aataaatgatccttgtagtccattgt 25324167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 25392678 - 25392803
Alignment:
Q  55 taagtgaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatacaatacactcaaactcttaatttcacaaagctcatc 154  Q
    |||| ||| ||||||||||||||||||||||||| |||||    ||||||||  ||  || ||||||  ||| ||||||||| |||||||||| ||| ||    
T  25392678 taagagaaatcatatttcccaaacatgttggtaaaactccagagagcttattattttttagatacaactcacccaaactcttcatttcacaaatctcctc 25392777  T
Q  155 aatcatggatccttgcagtccattgt 180  Q
    ||| |  |||||||| ||||||||||    
T  25392778 aataaatgatccttgtagtccattgt 25392803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 188
Target Start/End: Complemental strand, 24874141 - 24874005
Alignment:
Q  52 ttctaagtgaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatacaatacactcaaactcttaatttcacaaagctc 151  Q
    ||||||| ||||||||||||||||||||||||||||| || ||   |||||||||  ||  || ||||||  |||  ||||||||||||  ||| |||||    
T  24874141 ttctaagagaagtcatatttcccaaacatgttggtaaaacaccagaaagcttattattttctagatacaactcacctaaactcttaattagacagagctc 24874042  T
Q  152 atcaatcatggatccttgcagtccattgtaaccaaga 188  Q
    |||||| |  |||||||  ||| |||||||| |||||    
T  24874041 atcaatgaatgatcctttgagtgcattgtaagcaaga 24874005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 188
Target Start/End: Original strand, 25342363 - 25342499
Alignment:
Q  52 ttctaagtgaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatacaatacactcaaactcttaatttcacaaagctc 151  Q
    ||||||| ||||||||||||||| ||||||||||||| || ||   |||||||||  ||  || ||||||  |||  ||||||||||||  ||| |||||    
T  25342363 ttctaagagaagtcatatttcccgaacatgttggtaaaacaccagaaagcttattattttctagatacaactcacctaaactcttaattagacagagctc 25342462  T
Q  152 atcaatcatggatccttgcagtccattgtaaccaaga 188  Q
    |||||| |  |||||||  ||| |||||||| |||||    
T  25342463 atcaatgaatgatcctttgagtgcattgtaagcaaga 25342499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 188
Target Start/End: Original strand, 25571266 - 25571402
Alignment:
Q  52 ttctaagtgaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatacaatacactcaaactcttaatttcacaaagctc 151  Q
    ||||||| ||||||||||||||| ||||||||||||| || ||   |||||||||  ||  || ||||||  |||  ||||||||||||  ||| |||||    
T  25571266 ttctaagagaagtcatatttccctaacatgttggtaaaacaccagaaagcttattattttctatatacaactcacctaaactcttaattagacagagctc 25571365  T
Q  152 atcaatcatggatccttgcagtccattgtaaccaaga 188  Q
    |||||| |  |||||||  ||| |||||||| |||||    
T  25571366 atcaatgaatgatcctttgagtgcattgtaagcaaga 25571402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 243
Target Start/End: Complemental strand, 22899479 - 22899296
Alignment:
Q  60 gaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatacaatacactcaaactcttaatttcacaaagctcatcaatca 159  Q
    |||||||| |||||||||||||||||||| || || | ||||||||| |||  |||||||||  ||  |||| | | ||||| ||||||||| | ||  |    
T  22899479 gaagtcatgtttcccaaacatgttggtaaaacaccaaaaagcttattactttctaaatacaactcatccaaattgtcaatttgacaaagctccttaacaa 22899380  T
Q  160 tggatccttgcagtccattgtaaccaagatctaaatattgaagtttatgtaaccctttaattacaccagggattgatccattta 243  Q
      |||||||| ||||||||||  | |||||| ||    ||||||||||||||  |||||| |   ||||| |||||||||||||    
T  22899379 atgatccttgtagtccattgtttctaagatccaatccctgaagtttatgtaaatctttaaatgtgccaggtattgatccattta 22899296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 157
Target Start/End: Original strand, 25696746 - 25696848
Alignment:
Q  55 taagtgaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatacaatacactcaaactcttaatttcacaaagctcatc 154  Q
    |||| ||| |||||||||| |||||||||||||| |||||   |||||||||  ||   | ||||||  ||| ||||||||| |||||||||||||| ||    
T  25696746 taagagaaatcatatttcctaaacatgttggtaaaactccagaaagcttattattttcaagatacaactcacccaaactcttcatttcacaaagctcttc 25696845  T
Q  155 aat 157  Q
    |||    
T  25696846 aat 25696848  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 22899260 - 22899200
Alignment:
Q  279 ctcatgtttccaatttctagtggaatatttccattaattccacaagaatttgcccaaaagt 339  Q
    |||||||||||||  ||||| |||||||| |||| ||||||||| |||| |||| ||||||    
T  22899260 ctcatgtttccaacctctagaggaatattaccatcaattccacatgaatctgccaaaaagt 22899200  T

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Target: scaffold0070 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 188
Target Start/End: Complemental strand, 35761 - 35625
Alignment:
Q  52 ttctaagtgaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatacaatacactcaaactcttaatttcacaaagctc 151  Q
    ||||||| ||||||||||||||||||||||||||||| || ||   |||||||||  ||  || ||||||  |||  ||||||||||||  ||| |||||    
T  35761 ttctaagagaagtcatatttcccaaacatgttggtaaaacaccagaaagcttattattttctatatacaactcacctaaactcttaattagacagagctc 35662  T
Q  152 atcaatcatggatccttgcagtccattgtaaccaaga 188  Q
    |||||| |  |||||||  ||| |||||||| |||||    
T  35661 atcaatgaatgatcctttgagtgcattgtaagcaaga 35625  T

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Target: scaffold1415 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1415
Description:

Target: scaffold1415; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 217
Target Start/End: Original strand, 427 - 584
Alignment:
Q  60 gaagtcatatttcccaaacatgttggtaacactcctataagcttattgcttaataaatacaatacactcaaactcttaatttcacaaagctcatcaatca 159  Q
    ||||||||||||||||||||||||||||| |||||    ||||||||  |   || ||||||  ||| || ||| || |||||||||| ||| ||||| |    
T  427 gaagtcatatttcccaaacatgttggtaaaactccagagagcttattattgtctagatacaactcacccacacttttcatttcacaaaactcttcaataa 526  T
Q  160 tggatccttgcagtccattgtaaccaagatctaaatattgaagtttatgtaacccttt 217  Q
      |||||||| |||||||||   | |||||| ||||| |||||||| || ||||||||    
T  527 atgatccttgtagtccattgctgctaagatccaaatactgaagtttctgcaacccttt 584  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 10325450 - 10325497
Alignment:
Q  275 gttgctcatgtttccaatttctagtggaatatttccattaattccaca 322  Q
    ||||||||||||||||| |||||| |||||||| |||| |||||||||    
T  10325450 gttgctcatgtttccaacttctaggggaatattaccatcaattccaca 10325497  T

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