View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11866_low_19 (Length: 319)

Name: NF11866_low_19
Description: NF11866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11866_low_19
NF11866_low_19
[»] chr2 (19 HSPs)
chr2 (14-305)||(14957380-14957675)
chr2 (43-98)||(8805233-8805288)
chr2 (49-107)||(5095972-5096030)
chr2 (42-99)||(5962640-5962697)
chr2 (42-107)||(10288144-10288209)
chr2 (42-106)||(27307243-27307307)
chr2 (42-106)||(41353509-41353573)
chr2 (43-103)||(45693481-45693541)
chr2 (65-103)||(23391070-23391108)
chr2 (42-104)||(34144563-34144625)
chr2 (65-103)||(42607554-42607592)
chr2 (42-107)||(6884904-6884969)
chr2 (65-102)||(12358313-12358350)
chr2 (42-107)||(13553141-13553206)
chr2 (42-103)||(29168723-29168784)
chr2 (42-103)||(29871364-29871425)
chr2 (42-103)||(35171238-35171299)
chr2 (42-102)||(36383461-36383521)
chr2 (42-102)||(44484668-44484728)
[»] chr8 (16 HSPs)
chr8 (42-99)||(43186298-43186355)
chr8 (42-104)||(23952491-23952553)
chr8 (43-100)||(7118467-7118524)
chr8 (42-107)||(33817150-33817215)
chr8 (42-106)||(41519864-41519929)
chr8 (42-98)||(14228710-14228766)
chr8 (43-103)||(31666003-31666063)
chr8 (71-107)||(40413379-40413415)
chr8 (42-105)||(6004940-6005003)
chr8 (42-101)||(20852919-20852978)
chr8 (65-102)||(33115904-33115941)
chr8 (42-107)||(36064024-36064089)
chr8 (42-102)||(30927943-30928003)
chr8 (43-103)||(36497659-36497719)
chr8 (43-103)||(36740312-36740372)
chr8 (42-106)||(44711973-44712037)
[»] chr7 (10 HSPs)
chr7 (42-103)||(43255579-43255640)
chr7 (42-101)||(29763830-29763889)
chr7 (42-102)||(43079644-43079704)
chr7 (65-101)||(49167890-49167926)
chr7 (42-101)||(44175545-44175604)
chr7 (43-100)||(35212968-35213025)
chr7 (42-103)||(38023436-38023497)
chr7 (53-102)||(38990100-38990149)
chr7 (42-102)||(45555973-45556032)
chr7 (42-102)||(46651671-46651731)
[»] chr5 (9 HSPs)
chr5 (42-102)||(4954465-4954525)
chr5 (51-107)||(6538864-6538920)
chr5 (53-102)||(27005502-27005551)
chr5 (42-106)||(31626088-31626152)
chr5 (42-102)||(35814452-35814512)
chr5 (65-103)||(21353550-21353588)
chr5 (42-103)||(24329994-24330055)
chr5 (65-105)||(7927351-7927391)
chr5 (51-103)||(35464604-35464656)
[»] chr1 (26 HSPs)
chr1 (49-101)||(34157806-34157858)
chr1 (42-104)||(27352627-27352689)
chr1 (65-102)||(26101393-26101430)
chr1 (42-103)||(36669382-36669443)
chr1 (42-106)||(18610768-18610832)
chr1 (43-103)||(26547232-26547292)
chr1 (43-103)||(26585186-26585246)
chr1 (65-101)||(45350130-45350166)
chr1 (42-101)||(3919300-3919359)
chr1 (69-104)||(41885718-41885753)
chr1 (42-104)||(7078512-7078574)
chr1 (56-98)||(25994942-25994984)
chr1 (42-104)||(40612111-40612173)
chr1 (42-107)||(46281430-46281496)
chr1 (42-103)||(11812385-11812446)
chr1 (75-104)||(12259835-12259864)
chr1 (42-103)||(21854476-21854537)
chr1 (42-103)||(29489371-29489432)
chr1 (45-102)||(39128409-39128466)
chr1 (65-102)||(46910403-46910440)
chr1 (42-102)||(586898-586958)
chr1 (65-97)||(5043096-5043128)
chr1 (42-102)||(26501294-26501354)
chr1 (42-102)||(34941932-34941992)
chr1 (42-102)||(35846889-35846949)
chr1 (65-101)||(45863756-45863792)
[»] chr6 (9 HSPs)
chr6 (42-105)||(17417247-17417310)
chr6 (42-106)||(27334853-27334917)
chr6 (42-106)||(27395593-27395657)
chr6 (42-104)||(3339511-3339573)
chr6 (42-100)||(12501475-12501533)
chr6 (43-104)||(11785352-11785413)
chr6 (35-102)||(7636432-7636500)
chr6 (51-103)||(22492048-22492100)
chr6 (43-103)||(34413090-34413150)
[»] chr4 (21 HSPs)
chr4 (42-101)||(32901329-32901388)
chr4 (42-101)||(47105911-47105970)
chr4 (43-104)||(5466508-5466568)
chr4 (42-103)||(24235318-24235379)
chr4 (42-102)||(45779303-45779363)
chr4 (43-103)||(53662441-53662501)
chr4 (65-105)||(54591747-54591787)
chr4 (43-102)||(20056395-20056454)
chr4 (65-108)||(29694088-29694131)
chr4 (42-104)||(38864747-38864810)
chr4 (43-102)||(51107454-51107513)
chr4 (42-104)||(3222986-3223048)
chr4 (45-103)||(33484123-33484181)
chr4 (51-104)||(23094373-23094426)
chr4 (42-103)||(29577448-29577509)
chr4 (43-104)||(52487282-52487343)
chr4 (42-106)||(9032775-9032839)
chr4 (42-102)||(9472525-9472585)
chr4 (42-102)||(40629352-40629412)
chr4 (71-103)||(41262659-41262691)
chr4 (42-106)||(44368214-44368278)
[»] chr3 (19 HSPs)
chr3 (42-107)||(1295326-1295391)
chr3 (48-101)||(4189737-4189790)
chr3 (42-107)||(16267909-16267974)
chr3 (42-106)||(7867723-7867787)
chr3 (42-105)||(39901587-39901651)
chr3 (42-101)||(13159661-13159720)
chr3 (42-104)||(7226-7288)
chr3 (42-104)||(29800561-29800623)
chr3 (42-100)||(31206863-31206921)
chr3 (42-104)||(35376563-35376625)
chr3 (43-101)||(38693580-38693638)
chr3 (42-104)||(53932403-53932465)
chr3 (65-102)||(29705902-29705939)
chr3 (43-100)||(40419655-40419712)
chr3 (51-104)||(47849669-47849722)
chr3 (44-105)||(53473606-53473667)
chr3 (42-102)||(34021475-34021535)
chr3 (65-105)||(38363256-38363296)
chr3 (42-102)||(41717262-41717322)
[»] scaffold0204 (1 HSPs)
scaffold0204 (42-106)||(27334-27398)
[»] scaffold0522 (1 HSPs)
scaffold0522 (42-101)||(2516-2575)
[»] scaffold0002 (1 HSPs)
scaffold0002 (42-101)||(147268-147327)
[»] scaffold0018 (1 HSPs)
scaffold0018 (42-104)||(35999-36061)
[»] scaffold0004 (1 HSPs)
scaffold0004 (42-102)||(249154-249214)


Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 305
Target Start/End: Complemental strand, 14957675 - 14957380
Alignment:
Q  14 agagagaaagatttaaagcacaataaacgtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttttttcacttt 113  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||| || ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14957675 agagagaaagatttaaaggacaataaacgtatgagaaagaaaattgtacagaaattatcacaaaataattgttcatatatcatttctcttttttcacttt 14957576  T
Q  114 cgccttatatctcaatatatatat----ttttaagaaatatttgaatactcttaacttttcaacatttaatttatttaacacttatctttctctttacca 209  Q
    ||||||||||||||||||||||||    ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14957575 cgccttatatctcaatatatatatatattttcaagaaatatttgaatacccttaacttttcaacatttaatttatttaacacttatctttctctttacca 14957476  T
Q  210 ctcatcttgtcacaccactaatttatctcatttatcacatcattttctctctatttatttttctctcaagctgataataagatgtatggatgttca 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14957475 ctcatcttgtcacaccactaatttatctcatttatcacatcattttctctctatttatttttctctcaagctgataataagatgtatggatgttca 14957380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 8805288 - 8805233
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcattt 98  Q
    ||||||| |||||||||| || ||||||||| |||||| |||||||||||||||||    
T  8805288 tatgagatagaaagttgtccaaaaattatcataaaatagttgtacatatatcattt 8805233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 5095972 - 5096030
Alignment:
Q  49 aaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctttttt 107  Q
    ||||| |||||| || ||||||||||||||| |||||||| |||||||||||| |||||    
T  5095972 aaagagagttgtccaaaaattatcacaaaatgattgtacaaatatcatttctcattttt 5096030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 5962697 - 5962640
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttc 99  Q
    |||||||||| |||||||| || ||||||||||| ||| |||||||| ||||||||||    
T  5962697 gtatgagaaataaagttgtccaaaaattatcacataatgattgtacaaatatcatttc 5962640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 10288209 - 10288144
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctttttt 107  Q
    |||||||| | ||||||||  | |||||||||||||||| ||||||| ||||||||||||| ||||    
T  10288209 gtatgagagaaaaagttgtctaaaaattatcacaaaatagttgtacaaatatcatttctctatttt 10288144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 27307243 - 27307307
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttttt 106  Q
    |||||||| |||||||||| || || || ||||||| | |||||||| |||||||||||||||||    
T  27307243 gtatgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctcttttt 27307307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 41353509 - 41353573
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttttt 106  Q
    |||||||| ||||||||||  | ||||||||| ||| | |||||||| |||||||||||||||||    
T  41353509 gtatgagagagaaagttgttaaaaaattatcataaattgattgtacaaatatcatttctcttttt 41353573  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 45693481 - 45693541
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    ||||||||| ||||||||  | ||||||||| |||||||||||||| ||||||||| ||||    
T  45693481 tatgagaaaaaaagttgtcaaaaaattatcataaaataattgtacaaatatcatttttctt 45693541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 23391108 - 23391070
Alignment:
Q  65 aaattatcacaaaataattgtacatatatcatttctctt 103  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  23391108 aaattatcacaaattaattgtacaaatatcatttctctt 23391070  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 34144563 - 34144625
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    |||||||| |||||||||| || ||||| ||||||| |  ||||||| |||||||||||||||    
T  34144563 gtatgagagagaaagttgtacaaaaattgtcacaaattggttgtacaaatatcatttctcttt 34144625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 42607554 - 42607592
Alignment:
Q  65 aaattatcacaaaataattgtacatatatcatttctctt 103  Q
    ||||| |||||||||||||||||| ||||||||||||||    
T  42607554 aaattgtcacaaaataattgtacaaatatcatttctctt 42607592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 6884969 - 6884904
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctttttt 107  Q
    |||||||| ||||||||||  | || |||||||||| || ||||||| ||||||||||||| ||||    
T  6884969 gtatgagagagaaagttgtataaaagttatcacaaattagttgtacaaatatcatttctctatttt 6884904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 12358350 - 12358313
Alignment:
Q  65 aaattatcacaaaataattgtacatatatcatttctct 102  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  12358350 aaattgtcacaaaatgattgtacatatatcatttctct 12358313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 13553206 - 13553141
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctttttt 107  Q
    |||||||| ||||| |||| || ||||||||||||| |  ||||||| ||||||||||||| ||||    
T  13553206 gtatgagagagaaaattgtccaaaaattatcacaaagtggttgtacaaatatcatttctctatttt 13553141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 29168784 - 29168723
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    |||||||| ||||||||||||| || || ||| |||||  ||||||| ||||||||||||||    
T  29168784 gtatgagagagaaagttgtgcaaaagttgtcaaaaaatggttgtacaaatatcatttctctt 29168723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 29871364 - 29871425
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    |||||||||| |||||||| || || || ||| ||| |||||||||| ||||||||||||||    
T  29871364 gtatgagaaaaaaagttgttcaaaagttgtcataaactaattgtacaaatatcatttctctt 29871425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 35171238 - 35171299
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    |||||||| |||||||||| |  ||||| |||||||||  ||||||| ||||||||||||||    
T  35171238 gtatgagagagaaagttgtaccaaaattgtcacaaaatggttgtacaaatatcatttctctt 35171299  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 36383521 - 36383461
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| |||||||||| || || || |||||||||  ||||||| |||||||||||||    
T  36383521 gtatgagagagaaagttgtacaaaagttgtcacaaaatctttgtacaaatatcatttctct 36383461  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 44484668 - 44484728
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| |||||||||| || ||||| | |||||||  ||||||| |||||||||||||    
T  44484668 gtatgagagagaaagttgtacaaaaattgttacaaaatggttgtacaaatatcatttctct 44484728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 43186355 - 43186298
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttc 99  Q
    |||||||| |||||||||| || |||||||||||||||||||||||| ||||||||||    
T  43186355 gtatgagagagaaagttgtacaaaaattatcacaaaataattgtacaaatatcatttc 43186298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 23952553 - 23952491
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    |||||| ||||||| |||| || || | ||||||||||||||||||| |||||||||||||||    
T  23952553 gtatgaaaaagaaaattgtacaaaagtcatcacaaaataattgtacaaatatcatttctcttt 23952491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 7118524 - 7118467
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttct 100  Q
    ||||||||||||||||||  | |||| |||| |||||||||||||| |||||||||||    
T  7118524 tatgagaaagaaagttgtatagaaatgatcataaaataattgtacaaatatcatttct 7118467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 33817215 - 33817150
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctttttt 107  Q
    |||||| |||||||||||| || ||||| | ||||| | |||||||| ||||||||||||||||||    
T  33817215 gtatgaaaaagaaagttgtacaaaaattgttacaaattgattgtacaaatatcatttctctttttt 33817150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 41519929 - 41519864
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaat-aattgtacatatatcatttctcttttt 106  Q
    |||||||||||||||||||||| || || ||| ||||| ||||||||| |||| ||||||||||||    
T  41519929 gtatgagaaagaaagttgtgcaaaagttgtcataaaatgaattgtacaaatattatttctcttttt 41519864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 14228766 - 14228710
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcattt 98  Q
    |||||||| |||||||||| || || ||||||||||||| ||||||| |||||||||    
T  14228766 gtatgagagagaaagttgtacaaaagttatcacaaaatagttgtacaaatatcattt 14228710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 31666003 - 31666063
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    ||||||||||||||||||  | ||||| |||||||||  ||||||||||||||||| ||||    
T  31666003 tatgagaaagaaagttgtctaaaaattgtcacaaaatggttgtacatatatcatttatctt 31666063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 40413379 - 40413415
Alignment:
Q  71 tcacaaaataattgtacatatatcatttctctttttt 107  Q
    |||||||||||||||||| ||||||||||||||||||    
T  40413379 tcacaaaataattgtacaaatatcatttctctttttt 40413415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 6005003 - 6004940
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctttt 105  Q
    |||||||| ||||||||||  | ||||| ||||||| || ||||||| ||||||||||||||||    
T  6005003 gtatgagagagaaagttgtctaaaaattgtcacaaagtagttgtacaaatatcatttctctttt 6004940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 20852978 - 20852919
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctc 101  Q
    |||||||||||||||||||  | ||||||||| |||||  ||||||| ||||||||||||    
T  20852978 gtatgagaaagaaagttgtctaaaaattatcataaaatggttgtacaaatatcatttctc 20852919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 33115941 - 33115904
Alignment:
Q  65 aaattatcacaaaataattgtacatatatcatttctct 102  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  33115941 aaattatcacaaaataattatacaaatatcatttctct 33115904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 36064089 - 36064024
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctttttt 107  Q
    |||||||| ||||| |||| || || || ||||||||| |||||||| ||||||||||||| ||||    
T  36064089 gtatgagagagaaaattgtccaaaagttgtcacaaaatgattgtacaaatatcatttctctatttt 36064024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 30927943 - 30928003
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| |||||||||| || ||||| ||||||| |  ||||||| |||||||||||||    
T  30927943 gtatgagagagaaagttgtacaaaaattgtcacaaattggttgtacaaatatcatttctct 30928003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 36497719 - 36497659
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    ||||||| ||||||||||  | || || |||||||||| ||||||| ||||||||||||||    
T  36497719 tatgagagagaaagttgtctaaaagttgtcacaaaatagttgtacaaatatcatttctctt 36497659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 36740372 - 36740312
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    |||||||  |||||||||  | |||||||||| |||| |||||||| ||||||||||||||    
T  36740372 tatgagagggaaagttgtctaaaaattatcactaaatgattgtacaaatatcatttctctt 36740312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 44712037 - 44711973
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttttt 106  Q
    |||||||| ||||| ||||  | ||||||| ||||| |||||||| | |||||||||||||||||    
T  44712037 gtatgagagagaaaattgtcaaaaaattattacaaattaattgtataaatatcatttctcttttt 44711973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 43255579 - 43255640
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    |||||||||||||| |||| || ||||| |||||||||||||||||| |||||||| |||||    
T  43255579 gtatgagaaagaaaattgtacaaaaattgtcacaaaataattgtacaaatatcattactctt 43255640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 29763889 - 29763830
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctc 101  Q
    ||||||||||||||||||| || || ||||||||||||  ||||||| ||||||||||||    
T  29763889 gtatgagaaagaaagttgtacaaaagttatcacaaaatggttgtacaaatatcatttctc 29763830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 43079644 - 43079704
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| |||||||||| || ||||||||||||| |  ||||||| |||||||||||||    
T  43079644 gtatgagagagaaagttgtccaaaaattatcacaaagtggttgtacaaatatcatttctct 43079704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 49167890 - 49167926
Alignment:
Q  65 aaattatcacaaaataattgtacatatatcatttctc 101  Q
    |||||||||||||||||||||||| ||||||||||||    
T  49167890 aaattatcacaaaataattgtacaaatatcatttctc 49167926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 44175604 - 44175545
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctc 101  Q
    |||||||| |||||||||| || || |||||||||||| |||||||| |||| |||||||    
T  44175604 gtatgagagagaaagttgtacaaaagttatcacaaaatgattgtacaaatattatttctc 44175545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 35212968 - 35213025
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttct 100  Q
    ||||||| |||||||||| || ||||| |  ||||||||||||||| |||||||||||    
T  35212968 tatgagagagaaagttgtacaaaaattgtagcaaaataattgtacaaatatcatttct 35213025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 38023436 - 38023497
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    |||||||| ||||||||||  | ||||||||||||| |  ||||||| ||||||||||||||    
T  38023436 gtatgagagagaaagttgtctaaaaattatcacaaagtggttgtacaaatatcatttctctt 38023497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 38990149 - 38990100
Alignment:
Q  53 aaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| || ||||||| | ||||||||| ||||||||||||||||||    
T  38990149 aaagttgtccaaaaattatgaaaaaataattatacatatatcatttctct 38990100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 45556032 - 45555973
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| |||||||||| || || || |||||||||| |||||||| ||||||||||||    
T  45556032 gtatgagatagaaagttgt-caaaagttgtcacaaaatagttgtacatgtatcatttctct 45555973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 46651731 - 46651671
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| ||||||||||  | ||||| ||| ||| || |||||||||||||||||||||    
T  46651731 gtatgagagagaaagttgttaaaaaattgtcataaagtagttgtacatatatcatttctct 46651671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 4954525 - 4954465
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| |||||||||| ||||| || ||||||| |||||||||| |||||||||||||    
T  4954525 gtatgagagagaaagttgtacataagttgtcacaaattaattgtacaaatatcatttctct 4954465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 6538920 - 6538864
Alignment:
Q  51 agaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctttttt 107  Q
    ||||||||||  | |||||||||||||||||||||||| |||||||||||| |||||    
T  6538920 agaaagttgtcaaaaaattatcacaaaataattgtacaaatatcatttctcattttt 6538864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 27005502 - 27005551
Alignment:
Q  53 aaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| || ||||||||| |||||||||||||| |||||||||||||    
T  27005502 aaagttgtacaaaaattatcaaaaaataattgtacaaatatcatttctct 27005551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 31626088 - 31626152
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttttt 106  Q
    |||||||| | |||||||| || |||||||  |||||| |||||||| |||||||||||||||||    
T  31626088 gtatgagataaaaagttgtacaaaaattataccaaaatgattgtacaaatatcatttctcttttt 31626152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 35814512 - 35814452
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    ||||||||||||||||||| |  || ||||||||||||  ||||||| |||||||||||||    
T  35814512 gtatgagaaagaaagttgtaccaaagttatcacaaaatggttgtacaaatatcatttctct 35814452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 21353550 - 21353588
Alignment:
Q  65 aaattatcacaaaataattgtacatatatcatttctctt 103  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  21353550 aaattatcacaaaataattgtacaagtatcatttctctt 21353588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 24329994 - 24330055
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    |||||||| |||||||||| || || || |  ||||||||||||||| ||||||||||||||    
T  24329994 gtatgagagagaaagttgtacaaaagttgtaccaaaataattgtacaaatatcatttctctt 24330055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 7927391 - 7927351
Alignment:
Q  65 aaattatcacaaaataattgtacatatatcatttctctttt 105  Q
    ||||||||||||||| |||||| | ||||||||||||||||    
T  7927391 aaattatcacaaaatgattgtataaatatcatttctctttt 7927351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 35464604 - 35464656
Alignment:
Q  51 agaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    ||||| |||| || ||||||||| |||||||| ||||| ||||||||||||||    
T  35464604 agaaaattgttcaaaaattatcaaaaaataatcgtacaaatatcatttctctt 35464656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 34157858 - 34157806
Alignment:
Q  49 aaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctc 101  Q
    |||||||||||| || ||||||||||||||||||| |||| ||||||||||||    
T  34157858 aaagaaagttgtccaaaaattatcacaaaataattatacaaatatcatttctc 34157806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 27352689 - 27352627
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    |||||||| |||||||||| || || ||||||||||||  ||||||| |||||||||||||||    
T  27352689 gtatgagagagaaagttgtccaaaagttatcacaaaatggttgtacaaatatcatttctcttt 27352627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 26101430 - 26101393
Alignment:
Q  65 aaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||||||||||||||||||| |||||||||||||    
T  26101430 aaattatcacaaaataattgtacaaatatcatttctct 26101393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 36669382 - 36669443
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    |||||||| | |||||||| || ||||||||||||| | |||||||| ||||||||||||||    
T  36669382 gtatgagagaaaaagttgtacaaaaattatcacaaattgattgtacaaatatcatttctctt 36669443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 18610832 - 18610768
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttttt 106  Q
    |||||||| ||||||||||  | || || |||||||||| ||||||| |||||||||||||||||    
T  18610832 gtatgagagagaaagttgtaaaaaagttgtcacaaaatagttgtacaaatatcatttctcttttt 18610768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 26547292 - 26547232
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    ||||||| |||||||||| || ||||| ||||||||||  |||||| ||||||||||||||    
T  26547292 tatgagagagaaagttgttcaaaaattgtcacaaaatatatgtacaaatatcatttctctt 26547232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 26585186 - 26585246
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    ||||||| | |||||||| || || ||||||||||||| ||||||| ||||||||||||||    
T  26585186 tatgagagaaaaagttgtacaaaagttatcacaaaatagttgtacaaatatcatttctctt 26585246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 45350130 - 45350166
Alignment:
Q  65 aaattatcacaaaataattgtacatatatcatttctc 101  Q
    |||||||||||||||||||||||| ||||||||||||    
T  45350130 aaattatcacaaaataattgtacaaatatcatttctc 45350166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 3919359 - 3919300
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctc 101  Q
    |||||||| |||||||||| || ||||||| |||||||  ||||||| ||||||||||||    
T  3919359 gtatgagagagaaagttgtccaaaaattataacaaaatggttgtacaaatatcatttctc 3919300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 41885753 - 41885718
Alignment:
Q  69 tatcacaaaataattgtacatatatcatttctcttt 104  Q
    |||||||||||||||||||| |||||||||||||||    
T  41885753 tatcacaaaataattgtacaaatatcatttctcttt 41885718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 7078512 - 7078574
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    |||||||| |||||||||| || || || ||||||||||  |||||| |||||||||||||||    
T  7078512 gtatgagagagaaagttgttcaaaagttgtcacaaaatagatgtacaaatatcatttctcttt 7078574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 25994942 - 25994984
Alignment:
Q  56 gttgtgcataaattatcacaaaataattgtacatatatcattt 98  Q
    ||||| || |||||||||||||||||||||||| |||||||||    
T  25994942 gttgtccaaaaattatcacaaaataattgtacaaatatcattt 25994984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 40612173 - 40612111
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    |||||||| ||||||||||| | || || |||||||||  ||||||| |||||||||||||||    
T  40612173 gtatgagagagaaagttgtggagaagttgtcacaaaatggttgtacaaatatcatttctcttt 40612111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 46281496 - 46281430
Alignment:
Q  42 gtatgagaaagaaagttgtg-cataaattatcacaaaataattgtacatatatcatttctctttttt 107  Q
    |||||||| ||||||||||  || ||||||| |||||||| ||||||| |||||||||||| |||||    
T  46281496 gtatgagagagaaagttgtcacaaaaattattacaaaatagttgtacaaatatcatttctcattttt 46281430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 11812446 - 11812385
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    |||||||||| ||||||||  | ||||| ||||||||| ||||||||  |||||||||||||    
T  11812446 gtatgagaaataaagttgtcaaaaaattgtcacaaaatgattgtacaactatcatttctctt 11812385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 104
Target Start/End: Complemental strand, 12259864 - 12259835
Alignment:
Q  75 aaaataattgtacatatatcatttctcttt 104  Q
    ||||||||||||||||||||||||||||||    
T  12259864 aaaataattgtacatatatcatttctcttt 12259835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 21854476 - 21854537
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    |||||||| |||||||||| || || || |  ||||||||||||||| ||||||||||||||    
T  21854476 gtatgagagagaaagttgtacaaaagttgtaccaaaataattgtacaaatatcatttctctt 21854537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 29489371 - 29489432
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    |||||||| |||||||||| |  || ||||||||||||  ||||||| ||||||||||||||    
T  29489371 gtatgagagagaaagttgtaccaaagttatcacaaaatggttgtacaaatatcatttctctt 29489432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 39128466 - 39128409
Alignment:
Q  45 tgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    ||||| |||||||||| || |||||||  ||||||||||||||| |||| ||||||||    
T  39128466 tgagagagaaagttgtccaaaaattattgcaaaataattgtacaaatataatttctct 39128409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 46910440 - 46910403
Alignment:
Q  65 aaattatcacaaaataattgtacatatatcatttctct 102  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  46910440 aaattgtcacaaaatagttgtacatatatcatttctct 46910403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 586958 - 586898
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| | ||||||||  | ||||||||||||| | |||||||| |||||||||||||    
T  586958 gtatgagagaaaaagttgtctaaaaattatcacaaagtgattgtacaaatatcatttctct 586898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 5043128 - 5043096
Alignment:
Q  65 aaattatcacaaaataattgtacatatatcatt 97  Q
    |||||||||||||||||||||||| ||||||||    
T  5043128 aaattatcacaaaataattgtacaaatatcatt 5043096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 26501354 - 26501294
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| |||||||||| || || |||| |||||||  ||||||| |||||||||||||    
T  26501354 gtatgagagagaaagttgtccaaaagttattacaaaatggttgtacaaatatcatttctct 26501294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 34941932 - 34941992
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| ||||||||||  | ||||| ||||||||| || ||||| |||||||||||||    
T  34941932 gtatgagagagaaagttgtctaaaaattgtcacaaaatgatagtacaaatatcatttctct 34941992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 35846889 - 35846949
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| ||||||||||  | || |||||| |||||||| ||||| |||||||||||||    
T  35846889 gtatgagatagaaagttgtctaaaatttatcaaaaaataatagtacaaatatcatttctct 35846949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 45863756 - 45863792
Alignment:
Q  65 aaattatcacaaaataattgtacatatatcatttctc 101  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  45863756 aaattatcaaaaaataattgtacaaatatcatttctc 45863792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 17417247 - 17417310
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctttt 105  Q
    |||||||| |||||||||| || ||||| ||||| ||| |||||||| ||||||||||||||||    
T  17417247 gtatgagagagaaagttgtccaaaaattgtcacataatgattgtacaaatatcatttctctttt 17417310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 27334917 - 27334853
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttttt 106  Q
    ||||||||| ||||||| | || || || |||||||||| ||||||| |||||||||||||||||    
T  27334917 gtatgagaaggaaagttatacaaaagttgtcacaaaatagttgtacaaatatcatttctcttttt 27334853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 27395657 - 27395593
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttttt 106  Q
    ||||||||| ||||||| | || || || |||||||||| ||||||| |||||||||||||||||    
T  27395657 gtatgagaaggaaagttatacaaaagttgtcacaaaatagttgtacaaatatcatttctcttttt 27395593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 3339511 - 3339573
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    |||||||| |||||||||| || || || |||||||||  ||||||| |||||||||||||||    
T  3339511 gtatgagagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctcttt 3339573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 12501533 - 12501475
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttct 100  Q
    ||||| || ||||||||||  | ||||| |||||||||||||||||| |||||||||||    
T  12501533 gtatgtgagagaaagttgtttaaaaattgtcacaaaataattgtacaaatatcatttct 12501475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 11785413 - 11785352
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    ||||||| ||||||||||  | ||||| |||||||||  ||||||| |||||||||||||||    
T  11785413 tatgagatagaaagttgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctcttt 11785352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 7636432 - 7636500
Alignment:
Q  35 aataaacgtatgagaaagaaagttgtgcataaa-ttatcacaaaataattgtacatatatcatttctct 102  Q
    |||||| |||||||||||| |||||| || ||| |||| | ||||| |||||||| |||||||||||||    
T  7636432 aataaaagtatgagaaagagagttgtccaaaaagttattataaaatgattgtacaaatatcatttctct 7636500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 22492048 - 22492100
Alignment:
Q  51 agaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    ||||||||||  | || ||||||||||||  ||||||||||||||||||||||    
T  22492048 agaaagttgtcaagaagttatcacaaaatggttgtacatatatcatttctctt 22492100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 34413150 - 34413090
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    ||||||||||||||||||  | ||||| |  |||||| |||||||| ||||||||||||||    
T  34413150 tatgagaaagaaagttgtcaaaaaattgtagcaaaatgattgtacaaatatcatttctctt 34413090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 32901388 - 32901329
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctc 101  Q
    |||||| | ||||||||||||| ||||||||| |||||| ||||||| ||||||||||||    
T  32901388 gtatgaaagagaaagttgtgcaaaaattatcaaaaaatagttgtacaaatatcatttctc 32901329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 47105970 - 47105911
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctc 101  Q
    |||||||| |||||||||| || || |||||||||| |||||||||| ||||||||||||    
T  47105970 gtatgagagagaaagttgtacaaaagttatcacaaattaattgtacaaatatcatttctc 47105911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 5466508 - 5466568
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    ||||||| |||||||||| || |||||||  |||||||||||||||||||| ||||||||||    
T  5466508 tatgagagagaaagttgtccaaaaattattgcaaaataattgtacatatat-atttctcttt 5466568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 24235379 - 24235318
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    |||||||| |||||||||| || ||||| ||||||| | |||||||| ||||||||||||||    
T  24235379 gtatgagagagaaagttgtacaaaaattgtcacaaattgattgtacaaatatcatttctctt 24235318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 45779303 - 45779363
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||||||||||||||  | ||||||| |||||||| ||||| | |||||||||||||    
T  45779303 gtatgagaaagaaagttgtcaaaaaattataacaaaatagttgtataaatatcatttctct 45779363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 53662441 - 53662501
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    ||||||| |||||||||| || ||||| | |||||||| ||||||| ||||||||||||||    
T  53662441 tatgagagagaaagttgtacaaaaattgttacaaaatagttgtacaaatatcatttctctt 53662501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 54591747 - 54591787
Alignment:
Q  65 aaattatcacaaaataattgtacatatatcatttctctttt 105  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  54591747 aaattatcacaaaataattatacaaatatcatttctctttt 54591787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 20056454 - 20056395
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    ||||||| |||||||||| || ||||||| ||| |||| ||||||| |||||||||||||    
T  20056454 tatgagagagaaagttgtccaaaaattataacataatagttgtacaaatatcatttctct 20056395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 29694088 - 29694131
Alignment:
Q  65 aaattatcacaaaataattgtacatatatcatttctcttttttc 108  Q
    |||||||||||||||||| ||| | |||||||||||||||||||    
T  29694088 aaattatcacaaaataatagtagaaatatcatttctcttttttc 29694131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 38864747 - 38864810
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaa-ttatcacaaaataattgtacatatatcatttctcttt 104  Q
    |||||||| ||||||||||  | ||| || |||||||||||||||||| |||||||||||||||    
T  38864747 gtatgagagagaaagttgtcaaaaaagttgtcacaaaataattgtacaaatatcatttctcttt 38864810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 51107454 - 51107513
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    ||||||| ||||||||||||| |||||||   ||||| |||||||| |||||||||||||    
T  51107454 tatgagagagaaagttgtgcaaaaattatacaaaaatgattgtacaaatatcatttctct 51107513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 3223048 - 3222986
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    |||||||| |||||||||| || || || ||||||| | |||||||| |||||||||||||||    
T  3223048 gtatgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctcttt 3222986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 33484123 - 33484181
Alignment:
Q  45 tgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    ||||| |||||||||| || |||||||||||||||  ||||||| |||||||| |||||    
T  33484123 tgagagagaaagttgtccaaaaattatcacaaaatggttgtacaaatatcattactctt 33484181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 23094426 - 23094373
Alignment:
Q  51 agaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    ||||||||||  | || |||||||||||| |||||||| |||||||||||||||    
T  23094426 agaaagttgtctaaaagttatcacaaaatgattgtacaaatatcatttctcttt 23094373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 29577448 - 29577509
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctt 103  Q
    ||||||||||||||||||| || ||||| |   |||||| ||||||| ||||||||||||||    
T  29577448 gtatgagaaagaaagttgtacaaaaattgtacaaaaatagttgtacaaatatcatttctctt 29577509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 52487282 - 52487343
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    ||||||| |||||||| | || ||||||||||||| || ||||||| ||||||||| |||||    
T  52487282 tatgagagagaaagttatacaaaaattatcacaaattagttgtacaaatatcatttatcttt 52487343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 9032839 - 9032775
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttttt 106  Q
    |||||||| |||||||||| || || || ||||||| | |||||||| |||||||||||| ||||    
T  9032839 gtatgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctcatttt 9032775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 9472525 - 9472585
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| ||||||||||  | ||||||| | |||||| ||||||| |||||||||||||    
T  9472525 gtatgagagagaaagttgtcaaaaaattattagaaaatagttgtacaaatatcatttctct 9472585  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 40629352 - 40629412
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| |||||||||| || |  |||| |||||||| ||||||| |||||||||||||    
T  40629352 gtatgagagagaaagttgtccaaaggttattacaaaatagttgtacaaatatcatttctct 40629412  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 41262659 - 41262691
Alignment:
Q  71 tcacaaaataattgtacatatatcatttctctt 103  Q
    |||||||||||||||||| ||||||||||||||    
T  41262659 tcacaaaataattgtacaaatatcatttctctt 41262691  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 44368214 - 44368278
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttttt 106  Q
    |||| ||| |||||||||| || || || ||||||| | |||||||| |||||||||||||||||    
T  44368214 gtataagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctcttttt 44368278  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 1295391 - 1295326
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctttttt 107  Q
    |||||||| | |||||||| || || ||||||||||||| ||||||| |||||||||||| |||||    
T  1295391 gtatgagagaaaaagttgtccaaaagttatcacaaaatagttgtacaaatatcatttctcattttt 1295326  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 4189790 - 4189737
Alignment:
Q  48 gaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctc 101  Q
    |||||||| |||| || ||||||||||||||||||| |||| ||||||||||||    
T  4189790 gaaagaaaattgttcaaaaattatcacaaaataattctacaaatatcatttctc 4189737  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 16267909 - 16267974
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctttttt 107  Q
    |||||||| |||||||||| || ||||||| | ||||| ||| |||| ||||||||||||||||||    
T  16267909 gtatgagagagaaagttgttcaaaaattattagaaaatgattatacaaatatcatttctctttttt 16267974  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 7867723 - 7867787
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttttt 106  Q
    |||||||||||||| ||||  | || || |||||||||| ||||||| |||||||||||||||||    
T  7867723 gtatgagaaagaaaattgtttaaaagttgtcacaaaatagttgtacaaatatcatttctcttttt 7867787  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 39901651 - 39901587
Alignment:
Q  42 gtatgagaaagaaagttgtgc-ataaattatcacaaaataattgtacatatatcatttctctttt 105  Q
    |||||||| |||||||||| | | ||||||||| ||||| |||||||| ||||||||||||||||    
T  39901651 gtatgagatagaaagttgttccaaaaattatcaaaaaatgattgtacaaatatcatttctctttt 39901587  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 13159720 - 13159661
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctc 101  Q
    |||||||| |||||||||| || || || ||||||| |||||||||| ||||||||||||    
T  13159720 gtatgagagagaaagttgtacaaaagttgtcacaaattaattgtacagatatcatttctc 13159661  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 7226 - 7288
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    |||||||| |||||||||| || || || ||| ||||| |||||||| |||||||||||||||    
T  7226 gtatgagagagaaagttgtccaaaagttgtcagaaaatgattgtacaaatatcatttctcttt 7288  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 29800561 - 29800623
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    |||||||| | ||||||||  | ||||||||||||| || ||||||| |||||||||||||||    
T  29800561 gtatgagagaaaaagttgtctaaaaattatcacaaagtagttgtacaaatatcatttctcttt 29800623  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 31206863 - 31206921
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttct 100  Q
    |||||||||||||||||||  | || || ||||||||| |||||||| |||||||||||    
T  31206863 gtatgagaaagaaagttgtcaaaaatttgtcacaaaatgattgtacaaatatcatttct 31206921  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 35376563 - 35376625
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    |||||||| ||||||||||  | ||||| |||||||||  ||||||| |||||||||||||||    
T  35376563 gtatgagagagaaagttgtctaaaaattgtcacaaaatggttgtacaaatatcatttctcttt 35376625  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 38693580 - 38693638
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctc 101  Q
    ||||||| ||||| |||| || ||||||||||| ||||||||| || ||||||||||||    
T  38693580 tatgagagagaaaattgtccaaaaattatcacataataattgtgcaaatatcatttctc 38693638  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 53932403 - 53932465
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    ||||||||  ||||||||| || ||||| |||||||||  ||||||| |||||||||||||||    
T  53932403 gtatgagagtgaaagttgtccaaaaattgtcacaaaatggttgtacaaatatcatttctcttt 53932465  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 29705939 - 29705902
Alignment:
Q  65 aaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||||||||||||||||| | |||||||||||||    
T  29705939 aaattatcacaaaataattgtataaatatcatttctct 29705902  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 40419655 - 40419712
Alignment:
Q  43 tatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttct 100  Q
    ||||||| ||||| ||||  | ||||||||||||||| |||||||| |||||||||||    
T  40419655 tatgagagagaaaattgtctaaaaattatcacaaaatgattgtacaaatatcatttct 40419712  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 47849722 - 47849669
Alignment:
Q  51 agaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    ||||||||||  | |||||||||||||||  ||||||| |||||||||||||||    
T  47849722 agaaagttgtcaaaaaattatcacaaaatggttgtacaaatatcatttctcttt 47849669  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 53473667 - 53473606
Alignment:
Q  44 atgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctctttt 105  Q
    |||||| | |||||||| || || |||||||||| | |||||||| ||||||||||||||||    
T  53473667 atgagagaaaaagttgtacaaaagttatcacaaattgattgtacaaatatcatttctctttt 53473606  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 34021475 - 34021535
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    ||||||||||||||||||  || || || ||||||| | |||||||| |||||||||||||    
T  34021475 gtatgagaaagaaagttggacaaaagttgtcacaaattgattgtacaaatatcatttctct 34021535  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 38363256 - 38363296
Alignment:
Q  65 aaattatcacaaaataattgtacatatatcatttctctttt 105  Q
    ||||||| | |||||||||||||| ||||||||||||||||    
T  38363256 aaattattaaaaaataattgtacaaatatcatttctctttt 38363296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 41717322 - 41717262
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| ||||||||||  | || || |||| ||||||||||||| |||||||||||||    
T  41717322 gtatgagatagaaagttgtttaaaagttgtcactaaataattgtacaaatatcatttctct 41717262  T

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Target: scaffold0204 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 27398 - 27334
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttttt 106  Q
    |||||||| ||||||||||  | ||||| |||||||||   ||||||||||||||||||||||||    
T  27398 gtatgagagagaaagttgtcaaaaaattgtcacaaaatggatgtacatatatcatttctcttttt 27334  T

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Target: scaffold0522 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 2516 - 2575
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctc 101  Q
    |||||||| |||||||||| || ||||||||||| ||||  |||||| ||||||||||||    
T  2516 gtatgagagagaaagttgtccaaaaattatcacataatagatgtacaaatatcatttctc 2575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 147268 - 147327
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctc 101  Q
    |||||||| |||||||||| || || || ||||||| |||||||||| ||||||||||||    
T  147268 gtatgagagagaaagttgtacaaaagttgtcacaaattaattgtacagatatcatttctc 147327  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 36061 - 35999
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctcttt 104  Q
    |||| ||| ||||||||||  | ||||||||||||| || ||||||| |||||||||||||||    
T  36061 gtataagagagaaagttgtcaaaaaattatcacaaagtagttgtacaaatatcatttctcttt 35999  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 249154 - 249214
Alignment:
Q  42 gtatgagaaagaaagttgtgcataaattatcacaaaataattgtacatatatcatttctct 102  Q
    |||||||| |||||||||| || || |||||||||| | ||||| || |||||||||||||    
T  249154 gtatgagagagaaagttgtacaaaagttatcacaaattgattgtgcaaatatcatttctct 249214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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