View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11866_low_2 (Length: 689)
Name: NF11866_low_2
Description: NF11866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11866_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 568; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 16 - 678
Target Start/End: Complemental strand, 54896581 - 54895932
Alignment:
| Q |
16 |
ctaataacaaagtcgcggtgcgaaaatttcgtaatcattagatgccaaaataagcacacacatttaatgtccattaaacctcaataaactcaaaacaagc |
115 |
Q |
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| T |
54896581 |
ctaataacaaagtcgcggtgcgaaaatttcgtaatcattagatgccaaaataagcacacacatttaatgtccattaaacctcaataaactcaaaacaagc |
54896482 |
T |
|
| Q |
116 |
attgaaaattatagtattagtcataacaagcacatagtaatggttaagaaagnnnnnnnnctgataataaatttggaaagaaaatatcgtatcaaatcat |
215 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
54896481 |
atcgaaaattatagtattagtcataacaagcacatagtaatggttaagaaa--aaaaaaactgataataaatttggaaagaaaatatcgcatcaaatcat |
54896384 |
T |
|
| Q |
216 |
gaaatcaatttctttcctcaaaagtttctacttttgtttggcaaatccccaacaaatatatatttagatacaaaaccttattcttctttgttgttaagaa |
315 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
54896383 |
gaaatcaatttctttcctcaaaagtttctagttttgtttggcaaatccccaacaaatatat--ttagttacaaaaccttattcttctttgttgttaagaa |
54896286 |
T |
|
| Q |
316 |
aagagaacaaagggaacaaagccattaaatatatttgcatttttctctctaggccttttcttgaacttattcgtgtgttatttgtttgatcactaatcaa |
415 |
Q |
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| T |
54896285 |
aagagaacaaag---------ccattaaatatatttgcatttttctctctaggtcttttcttgaacttattcgtgtgttatttgtttgatcactaatcaa |
54896195 |
T |
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| Q |
416 |
tatacttgttttctgttttgtttatttgttttctggtttatgatggctgtggaggatcgtttggtgggtgaagatgttacagaagaaggttttccagttg |
515 |
Q |
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| T |
54896194 |
tatacttgttttctgttttgtttatttgttttctggtttatgatggctgtggaggatcgtttggtgggtgaagatgttacagaagaaggttttccagttg |
54896095 |
T |
|
| Q |
516 |
gtatgcgtgttctggctgttgatgatgatcagactagtctcaaagtgctggagaagcatcttctcacatgcaagtataatggttcgttgcctttcttttt |
615 |
Q |
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| T |
54896094 |
gtatgcgtgttctggctgttgatgatgatcagactagtctcaaagtgctggagaagcatcttctcacatgcaagtataatggttcgttgcctttcttttt |
54895995 |
T |
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| Q |
616 |
catttggtcaatttgattctccatttatgatgctttcatgttttcacttactattcttctctc |
678 |
Q |
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| T |
54895994 |
catttggtcaatttgattctccatttatgatgctttcatgttttcacttactattcttctctc |
54895932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 346 - 603
Target Start/End: Complemental strand, 54890955 - 54890694
Alignment:
| Q |
346 |
atatttgcatttttctctctaggccttttcttga-------acttattcgtgtgttatttgtttgatcactaatcaatatacttgttttctgttttgttt |
438 |
Q |
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||||||| ||||||||||||||||||||||||| |||| |||| |||| |||||| |||||||| ||||||| |||||||||||||||| | |
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| T |
54890955 |
atatttgtgtttttctctctaggccttttcttgagtttggaactttttcgagtgtgatttgtctgatcactgatcaata--cttgttttctgttttggat |
54890858 |
T |
|
| Q |
439 |
atttgttttctggtttatgatggctgtggaggatcgtttggtgggtgaagatgt-tacagaagaaggttttccagttggtatgcgtgttctggctgttga |
537 |
Q |
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||||| || |||||| | ||||||||||||| ||| ||||| || |||| |||| | |||| |||| |||||| || ||||||||||||||||||||||| |
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| T |
54890857 |
atttgatt-ctggttcacgatggctgtggagaatcctttggaggttgaaaatgtcttcaga-gaagattttccggtgggtatgcgtgttctggctgttga |
54890760 |
T |
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| Q |
538 |
tgatgatcagactagtctcaaagtgctggagaagcatcttctcacatgcaagtataatggttcgtt |
603 |
Q |
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||| ||||| ||| |||||||| || |||||||| |||||| | |||||||||||||||||||| |
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| T |
54890759 |
tgacgatcaaacttgtctcaaactgttggagaagtttcttcttatgtgcaagtataatggttcgtt |
54890694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 499 - 616
Target Start/End: Complemental strand, 54907369 - 54907252
Alignment:
| Q |
499 |
agaaggttttccagttggtatgcgtgttctggctgttgatgatgatcagactagtctcaaagtgctggagaagcatcttctcacatgcaagtataatggt |
598 |
Q |
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|||||||||||| | ||||||||||||||||| |||||||| |||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
54907369 |
agaaggttttccggcgggtatgcgtgttctggcagttgatgacgatccaacttatctcaaagtgctggagaagcaacttctcacatgcaactataatggt |
54907270 |
T |
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| Q |
599 |
tcgttgcctttctttttc |
616 |
Q |
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| T |
54907269 |
tcgttgcctttctttttc |
54907252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 22084543 - 22084579
Alignment:
| Q |
504 |
gttttccagttggtatgcgtgttctggctgttgatga |
540 |
Q |
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| T |
22084543 |
gttttcctgttggtatgcgtgttcttgctgttgatga |
22084579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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