View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11866_low_20 (Length: 306)
Name: NF11866_low_20
Description: NF11866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11866_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 31902642 - 31902365
Alignment:
| Q |
18 |
atttgttcttagcaaatttgttttgtattaacatattctatcaaattaaatgaatgaaatatcatttagtaannnnnnnn-agcgatcagnnnnnnngat |
116 |
Q |
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| T |
31902642 |
atttgttcttagcaaatttgttttgtattaacatattctatcaaattaaatgaatgaaatatcatttagtaatttttttttagcgatcagtttttttgat |
31902543 |
T |
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| Q |
117 |
gagtagttctaaggacaatcgaaacaatttaacttatgactatgtactttaactaacaataaagtggtttttgctattnnnnnnnnncaataaagtggtt |
216 |
Q |
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| T |
31902542 |
gagtagttctaaggacaatcgaaacaatttaatttatgactatgtactttaactaacaataaagtggtttttgctataaaaaaaaaacaataaagtggtt |
31902443 |
T |
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| Q |
217 |
ttttccctcaaaaatataaagnnnnnnnaagtgtcttaccatgcttcttttcttatttgtcgtttcttttgctctgtg |
294 |
Q |
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| T |
31902442 |
ttttccctcaaaaatataaagtttttttaagtgtcttaccatgcttcttttcttatttgtcgtttcttttgctttgtg |
31902365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 114 - 294
Target Start/End: Original strand, 31680495 - 31680674
Alignment:
| Q |
114 |
gatgagtagttctaaggacaatcgaaacaatttaacttatgactatgtactttaactaacaataaagtggtttttgctattnnnnnnnnncaataaagtg |
213 |
Q |
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| T |
31680495 |
gatgagtagtcctaaggacaatcgaaacaatttaatttatgactatgtactttaactaacaataaagtggtttttgcta-taaaaaaaaacaataaagtg |
31680593 |
T |
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| Q |
214 |
gttttttccctcaaaaatataaagnnnnnnnaagtgtcttaccatgcttcttttcttatttgtcgtttcttttgctctgtg |
294 |
Q |
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| T |
31680594 |
gttttttccctcaaaaatataaagtttttttaagtgtcttaccatgcttcttttcttatttgtcgtttcttttgctttgtg |
31680674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 117 - 294
Target Start/End: Complemental strand, 31918200 - 31918021
Alignment:
| Q |
117 |
gagtagttctaaggacaatcgaaacaatttaacttatgactatgtactttaactaacaataaagtggtttttgctatt--nnnnnnnnncaataaagtgg |
214 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
31918200 |
gagtagtcctaaggacaatcgaaacaatttaatttatgactatgtactttaactaacaataaagtggcttttgctattaaaaaaaaaaacaataaagtgg |
31918101 |
T |
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| Q |
215 |
ttttttccctcaaaaatataaagnnnnnnnaagtgtcttaccatgcttcttttcttatttgtcgtttcttttgctctgtg |
294 |
Q |
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| T |
31918100 |
ttttttccctcaaaaatataaagtttttttaagtgtcttaccatgcttcttttcttattggtcgtttcttttgctttgtg |
31918021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 52957220 - 52957262
Alignment:
| Q |
252 |
ttaccatgcttcttttcttatttgtcgtttcttttgctctgtg |
294 |
Q |
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| T |
52957220 |
ttaccatgcttcttttcttatttgtcgtttcttttgctttgtg |
52957262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 31674295 - 31674364
Alignment:
| Q |
18 |
atttgttcttagcaaatttgttttgtatt---aacatattctatcaaattaaatgaatgaaatatcatttagtaa |
89 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
31674295 |
atttgttcttagcaaatttgtattgtattaacaacatattctatc-----aaatgaatgaaatatcatttagtaa |
31674364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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