View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11866_low_21 (Length: 260)
Name: NF11866_low_21
Description: NF11866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11866_low_21 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 11696079 - 11695830
Alignment:
| Q |
1 |
tggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcattctca |
100 |
Q |
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| T |
11696079 |
tggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcattctca |
11695980 |
T |
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| Q |
101 |
atcttatttgataaaaataaataaaactaaagatgtattttcaagtctgttagaagttataatctctgctgttctaaattagtccattttaagaatggac |
200 |
Q |
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|||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11695979 |
atctcatttcataaaaataaataaaactaaacatgtattttcaagtctgttagaagttataatctctgctgttctaaattagtccattttaagaatggac |
11695880 |
T |
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| Q |
201 |
taatccagtaccgcagagataacaaaattgtgtgtttttaagtacctatg |
250 |
Q |
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| T |
11695879 |
taacccagaaccgcagagataacaaatttgtgtgtttgtaagtacctatg |
11695830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 11797920 - 11797825
Alignment:
| Q |
1 |
tggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
96 |
Q |
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| T |
11797920 |
tggtcctgttagatatgatatcaaattcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataattcatt |
11797825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 11701872 - 11701781
Alignment:
| Q |
5 |
cctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
96 |
Q |
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| T |
11701872 |
cctgttagatatgatatcaaattcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataatccatt |
11701781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 11675983 - 11675888
Alignment:
| Q |
1 |
tggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
96 |
Q |
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| T |
11675983 |
tggtcctgttagatatgatatcaagttcccttgaatcccataatatgataccctctctgccacttccacacctatacaaaacattcataactcatt |
11675888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 11684262 - 11684167
Alignment:
| Q |
1 |
tggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
96 |
Q |
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| T |
11684262 |
tggtcctgttagatatgatatcaagttcccttgaatcccataatatgataccctctctgccacttccacacctatacaaaacattcataactcatt |
11684167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 11779054 - 11778968
Alignment:
| Q |
5 |
cctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaatt |
92 |
Q |
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| T |
11779054 |
cctgttagatatgatatcaagtttcccttaaccccaaaatatgacatcctctctgccacctccacacctaaat-taacattcacaatt |
11778968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 16521 - 16426
Alignment:
| Q |
1 |
tggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
96 |
Q |
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|||||||||||||||||||||||| || || | ||| ||| ||||||| ||||||||| | ||||||||||||| |||||||||| ||| |||| |
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| T |
16521 |
tggtcctgttagatatgatatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatt |
16426 |
T |
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