View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11866_low_3 (Length: 683)
Name: NF11866_low_3
Description: NF11866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11866_low_3 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 290 - 683
Target Start/End: Complemental strand, 47417608 - 47417215
Alignment:
| Q |
290 |
aattcaaattgaaattctgctgtttattcgtccaatgatcttcaattgaatttctaggacgaaattgttttaagaggagtaaaatgcaacggcccataat |
389 |
Q |
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| T |
47417608 |
aattcaaattgaaattctgctgtttattcgtccaatgatcttcaattgaatttctaggacgaaattgttttaagaggagtaaaatgtaacggcccataat |
47417509 |
T |
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| Q |
390 |
tttgnnnnnnncctagttcgatgctaggttaagcaaccaaaactaaaaccctcaatttgtacatttcgcctatattctgtcatcttttctgccataagaa |
489 |
Q |
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| T |
47417508 |
tttgtctttttcctagttcgatgcaaggttaagcaaccaaaactaaaaccctcaatttgtacatttcgcctatattctgtcatcttttctgccataagaa |
47417409 |
T |
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| Q |
490 |
ttgattaactggcttgcaataatcaattaactcatttcatgccagggttaattacctgatattaatcgttagttgttttctgataaattaattgactgag |
589 |
Q |
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| T |
47417408 |
tcgattaactggcttgcaataatcaattaactcatttcatgccagggttaattacctgatattaatcgttagttgttttctgataaattaattgattgag |
47417309 |
T |
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| Q |
590 |
tctttgttattaataaactaattagctgtaaaatctgtctagaaacaatctaaaacaaaaataagtcttttgtaacatattaacacgaattaaa |
683 |
Q |
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| T |
47417308 |
tttttgttattaataaactaattaattgtaaaatctgtctagaaacaatctaaaacaaaaataagtcttttgtaatatattaacacgaattaaa |
47417215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 47417700 - 47417613
Alignment:
| Q |
163 |
ccaattggggtccttgtacactccaagtcgttatctttgcgcttgaacttgaattagtaatatccgtcgtatttccatttgtgccaaa |
250 |
Q |
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| T |
47417700 |
ccaattggggtccttgtacactccaagtcgttatctttgcgcttgaacttgaattagtaatgtccgtggtatttccatttgtgccaaa |
47417613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 47417845 - 47417764
Alignment:
| Q |
18 |
gaccatgggacaggacgtactgcaccacagatattggttatgagtccaagaaccagacttagagtagggctctagttcctac |
99 |
Q |
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| T |
47417845 |
gaccatgggacaggacgtactgcaccacagatattggttgtgagtccaagaaccagacttagagtagggctctagttcctac |
47417764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 206 - 365
Target Start/End: Complemental strand, 47406975 - 47406819
Alignment:
| Q |
206 |
tgaacttgaattagtaatatccgtcgtatttccatttgtgccaaaattgaatgcagttcttaacacttcctaaacttaatttctaattcaaattgaaatt |
305 |
Q |
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| T |
47406975 |
tgaacttgagttagtaatatcagtcatatttccatttgtgccaaaactgaatccaattcttaatgattcgtaaacttcatttctaattcaaattgaaatt |
47406876 |
T |
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| Q |
306 |
ctgctgtttattcgtccaatgatcttcaattgaatttctaggacgaaattgttttaagag |
365 |
Q |
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| T |
47406875 |
cagctgtttatttgtccagtg---ttcaattgaatttcgaggatggaattattttaagag |
47406819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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