View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11866_low_7 (Length: 554)
Name: NF11866_low_7
Description: NF11866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11866_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Original strand, 26216623 - 26217147
Alignment:
| Q |
19 |
tttctatcatagatattgcaaacttttaggatgtttgcttattgttaaatcttagaggatatccatagtaccaaatagcagaggtgatatttatgattgc |
118 |
Q |
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| T |
26216623 |
tttctatcatagatattgcaaacttttaggatgtttgcttattgttaaatcttagaggatatccatagtaccaaatagcagaggtgatatttatgattgc |
26216722 |
T |
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| Q |
119 |
ggatttgataactattttgtacatagaggtccactgtctctcacaaagattgaaagtagagagtaagattcaaagaaaatgtgaaaagttgtttccacac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26216723 |
ggatttgataactattttgtacatagaggtccactgtctctcacaaagattgaaagtagagagtaagattcaaagaaaatgtgaaaatttgtttccacac |
26216822 |
T |
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| Q |
219 |
ttttacaacatagggaacacgttgaaggaatattgcattagcctccaaactaacaaagattaaaataagttgaaacatacatgtattgatgtatatatat |
318 |
Q |
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| T |
26216823 |
ttttacaacatagggaacacgttgaaggaatattgcattagcctccaaactaacaaagattaaaataagttgaaacatacatgtattgatgtatatatat |
26216922 |
T |
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| Q |
319 |
gtatagaaatatcagctgtttgatcataaggacttttgatgctgtgcaagaaattaattaaccaaattaaaaaacacaagtccctaacttacatataaac |
418 |
Q |
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| T |
26216923 |
gtatagaaatatcagctgtttgatcataaggacttttgatgctgtgcaagaaattaatgaaccaaatttaaaaacacaagtccctaacttacatataaac |
26217022 |
T |
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| Q |
419 |
acaatgcaagcaatccaatgtcaaaattttaagccaatagttcctagtaaattcatgcagaagctgt----ttcaaaatgaaaatcagaaaagttgaact |
514 |
Q |
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| T |
26217023 |
acaatgcaagcaatccaatgtcaaaattttaagccaatagttcctagtaaattcatgcagaagctgtttcattcaaaatgaaaatcagaaaagttgaact |
26217122 |
T |
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| Q |
515 |
tcaataatgctttgtagtatctgtg |
539 |
Q |
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| T |
26217123 |
tctataatgctttgtagtatctgtg |
26217147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 8e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 380 - 539
Target Start/End: Complemental strand, 18212582 - 18212423
Alignment:
| Q |
380 |
ccaaattaaaaaacacaagtccctaacttacatataaacacaatgcaagcaatccaatgtcaaaattttaagccaatagttcctagtaaattcatgcaga |
479 |
Q |
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| T |
18212582 |
ccaaatttaaaaacacaagtccctaacttacatataaacacaatgcaagcaatccaatgtcaaaattttaagtcaatagttcctagtaaattcatgcaga |
18212483 |
T |
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| Q |
480 |
agctgtttcaaaatgaaaatcagaaaagttgaacttcaataatgctttgtagtatctgtg |
539 |
Q |
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| T |
18212482 |
agctgtttcaaaatgaaaatcagaaaagttgaacttctataatgctttgtagtatctgtg |
18212423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 322 - 376
Target Start/End: Complemental strand, 28847150 - 28847097
Alignment:
| Q |
322 |
tagaaatatcagctgtttgatcataaggacttttgatgctgtgcaagaaattaat |
376 |
Q |
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| T |
28847150 |
tagaaatatcagctgtttgatcataaggac-tatgatgctgtgcaagaaattaat |
28847097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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