View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_high_11 (Length: 519)
Name: NF11867_high_11
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 3889790 - 3889581
Alignment:
| Q |
13 |
caaaggcaatgaaatcaaaggaacaaacgaaattagggattgagaggaaaaccttcattgtgaaatgttgatttggatctcagcttcttcgttcgcgata |
112 |
Q |
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| T |
3889790 |
caaaagcaatgaaatcaaaggaacaaacgaaattagggattgagaggaaaaccttcattgtgaaatgttgatttggatctcagcttcttcgttcgcgata |
3889691 |
T |
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| Q |
113 |
cggcgagtgagctc-aactcaaagatgatagaaattagggtttttgtctctctttttcttatgatgctatcaaattgggcctaaccaagcccatgtccac |
211 |
Q |
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| T |
3889690 |
cggcgagtgagctcaaactcaaagatgatagaaattagggtttttgtctctc--tttcttatgatgttatcaaattgggcctaaccaagcccatgtccac |
3889593 |
T |
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| Q |
212 |
acagttgagccc |
223 |
Q |
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| T |
3889592 |
acagttgagccc |
3889581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 276 - 501
Target Start/End: Complemental strand, 3889528 - 3889306
Alignment:
| Q |
276 |
gtgactaaaatacatagtttgtaccaaataaataaatatacatatataatttgtagaaatgtacgatttttcttgacnnnnnnnnn-tagacnnnnnnnn |
374 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3889528 |
gtgactaaaatacatagtttgtaccaaataaata----tacatatataatttgtagaaatgtacgatttttcttgacaaaaaaaaaatagactttttttt |
3889433 |
T |
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| Q |
375 |
nngaaggaagtagaaatatttatttatttattttgattttaaagggactagtggcaaaactctcacacagtggataattgcatatttaaatttggatttt |
474 |
Q |
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| T |
3889432 |
tttaagcaagtagaaatatttatttatttatttttattttaaagggactagtggcaaaactctcacgcagtggataattgcatatttaaatttggatttt |
3889333 |
T |
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| Q |
475 |
agtatatccattgttcatgctacctat |
501 |
Q |
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| T |
3889332 |
agtatatccattgttcatgctacctat |
3889306 |
T |
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