View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_high_13 (Length: 482)
Name: NF11867_high_13
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 46666838 - 46667302
Alignment:
| Q |
18 |
catcaaacccttaatttattgaaaaatatgacaatagttagataaattttatcgttaagtgatgcaattcaattaaccatatgtttggtgatagcacaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||| |||||||||| |
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| T |
46666838 |
catcaaacccttaatttattgaaaaatatgacaatagttagagaaattttatcgtaaaatgatgcaattcaattaaccatatgtttggtaatagcacaac |
46666937 |
T |
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| Q |
118 |
tcaattcaataaaatcaaatactacttaaaaaataaacacaccctt---------cttctacgatacattcgtaaattgaggtgttaggatactctacct |
208 |
Q |
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| T |
46666938 |
tcaattcaataaaatcaaatactacttaaaaaataaacacacccttacttaagaacttctacgatacattcgtaaattgaggtgttaggatactctacct |
46667037 |
T |
|
| Q |
209 |
acctgattaagcatccacttgaagccaatagcagcagagcactcattcttggaagcactagtaaaccaatcaagattatacacttcatttatagtcttca |
308 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46667038 |
acctgattaagcatccacttgtagccaatagcagcagagcactcattcttggaagcactagtgaaccaatcaagattatacacttcatttatagtcttca |
46667137 |
T |
|
| Q |
309 |
aaattaaagaaacattttcccttcttttctcaactgaaaatatttctccatttgagcttacgttaatatgactattcaaaaatgtttcaaaccaaccact |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46667138 |
aaattaaagaaacattttcccttcttttctcaactgaaaatatttctccatttgagcttacgttaatatgactattcaaaaatgtttcaaaccaaccact |
46667237 |
T |
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| Q |
409 |
cccagatctttgcattgacacaatgcaaaaatatcgtacaggattgcaactacactcctctctgc |
473 |
Q |
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| T |
46667238 |
cccagatctttgcattgacacaatgcaaaaatatcgtacaggattgcaactacactcctctctgc |
46667302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 44195436 - 44195520
Alignment:
| Q |
344 |
gaaaatatttctccatttgagcttacgttaatatgactattcaaaaatgtttcaaaccaaccactcccagatctttgcattgaca |
428 |
Q |
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| T |
44195436 |
gaaaagatttctccatttgagcttatgttaggatgactatttaaaaacgtctcatgccatccactcccaaatctctgcatcgaca |
44195520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 209 - 426
Target Start/End: Complemental strand, 6117178 - 6116961
Alignment:
| Q |
209 |
acctgattaagcatccacttgaagccaatagcagcagagcactcattcttggaagcactagtaaaccaatcaagattatacacttcatttatagtcttca |
308 |
Q |
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| T |
6117178 |
acctgattaagcatccacttgaaacccacagctgagttgcactcattcttagaagcactagtaaaccaatcaagattgtacaccttatcaagtgtcttca |
6117079 |
T |
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| Q |
309 |
aaattaaagaaacattttcccttcttttctcaactgaaaatatttctccatttgagcttacgttaatatgactattcaaaaatgtttcaaaccaaccact |
408 |
Q |
| |
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||||| | |||| ||||||||||||||| || |||||||| || ||||| || |||| ||||| ||||||||||||| ||| |||||||| ||||| |
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| T |
6117078 |
aaattgatgaaatattttcccttcttttgggtacagaaaatatctccccattggaacttatattaatgtgactattcaaaagtgtctcaaaccacccact |
6116979 |
T |
|
| Q |
409 |
cccagatctttgcattga |
426 |
Q |
| |
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|||||||||||||||||| |
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| T |
6116978 |
cccagatctttgcattga |
6116961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 208 - 417
Target Start/End: Complemental strand, 6522001 - 6521792
Alignment:
| Q |
208 |
tacctgattaagcatccacttgaagccaatagcagcagagcactcattcttggaagcactagtaaaccaatcaagattatacacttcatttatagtcttc |
307 |
Q |
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|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| | | ||| || | ||| || ||| || || ||||| | |
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| T |
6522001 |
tacctgattaagcatccacttgaagccaattgcggcagaacactcattcttggaagcactactgagccagtccaaattgtatactctatctaaagtctgc |
6521902 |
T |
|
| Q |
308 |
aaaattaaagaaacattttcccttcttt-tctcaactgaaaatatttctccatttgagcttacgttaatatgactattcaaaaatgtttcaaaccaacca |
406 |
Q |
| |
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|||||| ||||| |||||| |||||||| ||| ||| |||||||| || || || |||||||| ||||| ||||||||||||| || |||||||| ||| |
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| T |
6521901 |
aaaattgaagaagcattttgccttctttctct-aacagaaaatatctcgccgttcgagcttacattaatgtgactattcaaaagggtctcaaaccaccca |
6521803 |
T |
|
| Q |
407 |
ctcccagatct |
417 |
Q |
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| T |
6521802 |
ctgccagatct |
6521792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 33930366 - 33930286
Alignment:
| Q |
208 |
tacctgattaagcatccacttgaagccaatagcagcagagcactcattcttggaagcactagtaaaccaatcaagattata |
288 |
Q |
| |
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||||||||||||||||||||| ||||||| |||||| | ||||||||| || ||||||||| ||||||| || |||||||| |
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| T |
33930366 |
tacctgattaagcatccacttcaagccaacagcagccgtgcactcatttttagaagcactattaaaccagtctagattata |
33930286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 33930230 - 33930146
Alignment:
| Q |
344 |
gaaaatatttctccatttgagcttacgttaatatgactattcaaaaatgtttcaaaccaaccactcccagatctttgcattgaca |
428 |
Q |
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||||| ||||| ||||||||||||| |||| ||||||||| ||||| || |||||||| |||||||||||||| ||||| |||| |
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| T |
33930230 |
gaaaagatttccccatttgagcttatgttaggatgactatttaaaaacgtctcaaaccatccactcccagatctctgcatcgaca |
33930146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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