View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_high_14 (Length: 460)
Name: NF11867_high_14
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Complemental strand, 40214415 - 40213966
Alignment:
| Q |
18 |
attctaagcacattttagatttaagtgcgtatacgtnnnnnnnttattattgtgtagaaataatactttgtttctgtgcttagtctacggagttgc---- |
113 |
Q |
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| T |
40214415 |
attctaagcacgttttagatttaagtgcgtatacgtcccccccttattattgtgtagaaataatactttgtttctgttattagtctacggagttgtaatt |
40214316 |
T |
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| Q |
114 |
----------------ttataagaaaaaacatgatactcaaaaggctaacctatacatacattaaaaggataaggtcatttttacaagaagaagctaaga |
197 |
Q |
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| T |
40214315 |
ggggacaccttatagtttatacgaaaaaacatgatactcaaaaggctaacctatacatacattaaaaggataaggtcatttttacaagaagaagctaaga |
40214216 |
T |
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| Q |
198 |
cagtacaccatggccaccgaattcaagcaatggagtcttactcaatgcgggtccggttcaacattaatttgttccctgcatgcatggcagaaataaataa |
297 |
Q |
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| T |
40214215 |
cagtacaccatggccaccgaattcaagcaatggagtcttactcaatgcgggtccggttcaacattaatttgttccctgcatgcatggcagaaataaataa |
40214116 |
T |
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| Q |
298 |
tattcatacaaataatataataaagggtcagtgcaggagaattagcataaatgaatattgataaatcatttttgcttgtgaaaaaataaaacatccaatc |
397 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40214115 |
tattcatagaaataatataataaaggttcagtgcaggagaattagcataaatgaatattgataaatcgtttttgcttgtgaaaaaataaaacatccaatc |
40214016 |
T |
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| Q |
398 |
caacactaatttaatatctagaactattactttagaaagcatatatatct |
447 |
Q |
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| T |
40214015 |
caacactaatttaatatctagaactattactttagaaagcatatatatct |
40213966 |
T |
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