View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_high_17 (Length: 403)
Name: NF11867_high_17
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 4909855 - 4910226
Alignment:
| Q |
18 |
catattaactattttatctgcaacttatttttggtgagaatcaattcactccaaaggaattctcatcactacataatcaaacattgactccatctatttg |
117 |
Q |
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| T |
4909855 |
catattaactattttatctgcaacttatttttggtgagaatcaattcactccaaaggaattctcatcactacataatcaaacattgactccatctatttg |
4909954 |
T |
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| Q |
118 |
aaatatttagtgatatgctattaattttaaactagcaactagttagttattaattttaggaacttgtaacatttaattaaacgtgattatgttgtaaatc |
217 |
Q |
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| T |
4909955 |
aaatatttagtgatatgctattaattttaaactagcaactagttagctattaattttaggaatttgtaacatttaattaaacgtgattatgttgtaaatc |
4910054 |
T |
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| Q |
218 |
aaatcaacagacggacaagacttcagtcataggagatgctatcaagcatgtgaaagagctccaagaacgtttgagagtattagaagaagagaacaagaat |
317 |
Q |
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| T |
4910055 |
aaatcaacagacggacaatacttcagtcataggagatgctatcaagcatgtgaaagagctccaggaacgtttgagagtattagaagaagagaacaagaat |
4910154 |
T |
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| Q |
318 |
agtcatattgaatctgtagtgacgcttaacaaattgctgctaagttacaagtcatggagtgatgatggttct |
389 |
Q |
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| T |
4910155 |
agtcatattgaatctgtagtgacgcttaacaaattgctgctaatttacaagtcatggagtgatgatggttct |
4910226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 181 - 389
Target Start/End: Original strand, 4917073 - 4917281
Alignment:
| Q |
181 |
ttgtaacatttaattaaacgtgattatgttgtaaatcaaatcaacagacggacaagacttcagtcataggagatgctatcaagcatgtgaaagagctcca |
280 |
Q |
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| T |
4917073 |
ttgtaacatttaattaaacttgcttctattgtaaatcaaatctatagatggacaaggcttcagtcataggggatgctatcaagcatgtaaaagagctcca |
4917172 |
T |
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| Q |
281 |
agaacgtttgagagtattagaagaagagaacaagaatagtcatattgaatctgtagtgacgcttaacaaattgctgctaagttacaagtcatggagtgat |
380 |
Q |
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| T |
4917173 |
agaacgtttgagagtattagaagaacaaaacaagaatagtcctattgagtttgtagtgacgcttaacaaaccgaagctaaattatgagtcatggagtgat |
4917272 |
T |
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| Q |
381 |
gatggttct |
389 |
Q |
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| T |
4917273 |
gatggttct |
4917281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 165 - 341
Target Start/End: Original strand, 4893605 - 4893779
Alignment:
| Q |
165 |
tattaattttaggaacttgtaacatttaattaaacgtgattatgttgtaaatcaaatcaacagacggacaagacttcagtcataggagatgctatcaagc |
264 |
Q |
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| T |
4893605 |
tattaattataggaattt-tagcatctaagtaaactttattatgttgtaaaa-aaatctacagatggacaaggcttcagtcctaggagatgcaatcaagt |
4893702 |
T |
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| Q |
265 |
atgtgaaagagctccaagaacgtttgagagtattagaagaagagaacaagaatagtcatattgaatctgtagtgacg |
341 |
Q |
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| T |
4893703 |
acgtgaaagagctccaagaacgtttgagggtattagaggaacaaaacaaaaatagtcatgttcagtctgtggtgacg |
4893779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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