View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_high_21 (Length: 370)
Name: NF11867_high_21
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 10 - 356
Target Start/End: Complemental strand, 43614146 - 43613796
Alignment:
| Q |
10 |
atgagatgaagatgatatgaatgcctttgtaactgcaagcaaacaaaacaaaaagactagagttggatgggtcaactctcaattcattcaaataaataaa |
109 |
Q |
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| T |
43614146 |
atgagatgaagatgatatgaacgcctttgtaactgcaagcaaacaaaacaaaaagactagagttggatgggtcaactctcaattcattcaaataaataaa |
43614047 |
T |
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| Q |
110 |
gaaaggtaaagattttcaatctttggagagtctaaggcattgtctaacatgtattttcgtaaaatacatgttgctggtgattggtttagcttaaaagtaa |
209 |
Q |
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| T |
43614046 |
gaaaggtaaagattttcaatctttggagagtctaaggcattgtctaacatgtattttcgtaaaatacatgttgctggtgattggtttagcttaaaagtaa |
43613947 |
T |
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| Q |
210 |
a----tactccaaagtagagttaagatccattttgatcctcacaaatttttgacggtctaattcagttttgacaaaaacaaaatccaaagtagtcgggta |
305 |
Q |
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| T |
43613946 |
ataagtattaaaaactagagttaagatccattttgatcctcacaaatttttgacggtctaattcagttttgacaaaaacaaaatccaaagtagtcgggta |
43613847 |
T |
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| Q |
306 |
tagcacaatagaacaaaactaacttatgatattatatttataaacatttgt |
356 |
Q |
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| T |
43613846 |
tagcacaatagaacaaaactaacttatgatattatatttataaacatttgt |
43613796 |
T |
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