View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_high_23 (Length: 337)
Name: NF11867_high_23
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_high_23 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 97 - 288
Target Start/End: Complemental strand, 11696247 - 11696056
Alignment:
| Q |
97 |
gaagtaaagaacataaccaaccaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagaga |
196 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11696247 |
gaagtaaggaacataaccaaccaatatatagatgagagaagcaagcatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagaga |
11696148 |
T |
|
| Q |
197 |
ggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaa |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696147 |
ggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaa |
11696056 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 98 - 324
Target Start/End: Complemental strand, 11779225 - 11778999
Alignment:
| Q |
98 |
aagtaaagaacataaccaaccaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagag |
197 |
Q |
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|||| ||||||| |||||||||||| |||||| ||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||||||||| |
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| T |
11779225 |
aagtgaagaacagaaccaaccaatacatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaatgaatgcaccaaagagag |
11779126 |
T |
|
| Q |
198 |
gaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaagtttccctt |
297 |
Q |
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|||| |||||||||||||||||||||| ||||||||| | |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11779125 |
gaaggagagaagcagttccagcccaaacattcacattcttagcagcagttgcagtgctttgtttgagtggccctgttagatatgatatcaagtttccctt |
11779026 |
T |
|
| Q |
298 |
aatcccaaaatatgacatcctctctgc |
324 |
Q |
| |
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|| |||||||||||||||||||||||| |
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| T |
11779025 |
aaccccaaaatatgacatcctctctgc |
11778999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 122 - 324
Target Start/End: Complemental strand, 11798063 - 11797861
Alignment:
| Q |
122 |
atatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagccc |
221 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11798063 |
atatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccaaccc |
11797964 |
T |
|
| Q |
222 |
aaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaagtttcccttaatcccaaaatatgacatcctctc |
321 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | ||| ||| ||||||| | |||||| |
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| T |
11797963 |
aaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgataccctctc |
11797864 |
T |
|
| Q |
322 |
tgc |
324 |
Q |
| |
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||| |
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| T |
11797863 |
tgc |
11797861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 116 - 324
Target Start/End: Complemental strand, 11676132 - 11675924
Alignment:
| Q |
116 |
accaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttc |
215 |
Q |
| |
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||||| ||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |
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| T |
11676132 |
accaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactc |
11676033 |
T |
|
| Q |
216 |
cagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaagtttcccttaatcccaaaatatgacat |
315 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| || | ||||||| ||||||| | |
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| T |
11676032 |
cagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgatac |
11675933 |
T |
|
| Q |
316 |
cctctctgc |
324 |
Q |
| |
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||||||||| |
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| T |
11675932 |
cctctctgc |
11675924 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 116 - 324
Target Start/End: Complemental strand, 11684411 - 11684203
Alignment:
| Q |
116 |
accaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttc |
215 |
Q |
| |
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||||| ||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |
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| T |
11684411 |
accaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactc |
11684312 |
T |
|
| Q |
216 |
cagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaagtttcccttaatcccaaaatatgacat |
315 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| || | ||||||| ||||||| | |
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| T |
11684311 |
cagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgatac |
11684212 |
T |
|
| Q |
316 |
cctctctgc |
324 |
Q |
| |
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||||||||| |
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| T |
11684211 |
cctctctgc |
11684203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 116 - 324
Target Start/End: Complemental strand, 11702025 - 11701817
Alignment:
| Q |
116 |
accaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttc |
215 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |
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| T |
11702025 |
accaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagctgttc |
11701926 |
T |
|
| Q |
216 |
cagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaagtttcccttaatcccaaaatatgacat |
315 |
Q |
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|
||||||||| ||| ||||| | ||||||| |||||||||| ||||||||||| |||||||||||||||||||| || || | ||| ||| ||||||| | |
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| T |
11701925 |
cagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataatatgatac |
11701826 |
T |
|
| Q |
316 |
cctctctgc |
324 |
Q |
| |
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||||||||| |
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|
| T |
11701825 |
cctctctgc |
11701817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 98 - 325
Target Start/End: Complemental strand, 16688 - 16461
Alignment:
| Q |
98 |
aagtaaagaacataaccaaccaatatatagatgagagaagcaagtatgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaaagagag |
197 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| | || |||||||||||||||||||||| ||||||||| ||||||| |
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| T |
16688 |
aagtgaagaacagaaccaaccaatatatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaacgaaagcacctaagagag |
16589 |
T |
|
| Q |
198 |
gaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaagtttccctt |
297 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16588 |
gaagtagagaagcagttccagcccaaatattcacattcttagcagctgttgcagtgctttgtttgagtggtcctgttagatatgatatcaagtttccctt |
16489 |
T |
|
| Q |
298 |
aatcccaaaatatgacatcctctctgct |
325 |
Q |
| |
|
|||||||| |||||| |||||||||||| |
|
|
| T |
16488 |
aatcccaatatatgatatcctctctgct |
16461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 6627 - 6675
Alignment:
| Q |
143 |
atgattgtgcggtaacgtccaagaaaagaatcagcaatgaaagcaccaa |
191 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
6627 |
atgatggtgcggtaacggccaagaaaagaatcagcaagaaaagcaccaa |
6675 |
T |
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