View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11867_high_3 (Length: 751)

Name: NF11867_high_3
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11867_high_3
NF11867_high_3
[»] chr5 (1 HSPs)
chr5 (20-741)||(6948155-6948879)
[»] chr4 (1 HSPs)
chr4 (30-63)||(28007928-28007961)


Alignment Details
Target: chr5 (Bit Score: 670; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 20 - 741
Target Start/End: Complemental strand, 6948879 - 6948155
Alignment:
Q  20 ggtggcattatgattttgtcaatctcatcgtcaatccaaacatacacataatggaactcgacaatatcaatgctttccctctgcatgttcatcaaaagca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948879 ggtggcattatgattttgtcaatctcatcgtcaatccaaacatacacataatggaactcgacaatatcaatgctttccctctgcatgttcatcaaaagca 6948780  T
Q  120 aattactgctggctgcgggtcatcatcgattcaagaactttgagaatttgtattatctgcaaaaagcaacatcataattaatgtttaaacatataatttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6948779 aattactgctggctgcgggtcatcatcgattcaagaactttgagaatttgtattatctgcaaaaagcaatatcataattaatgtttaaacatataatttt 6948680  T
Q  220 ttaatcttttagaaaagataagactaaacaccaaggtttcgttgatccgagtcaaattagacctaaccaaaagatcaaattaaacaccgatgtttcattg 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6948679 ttaatcttttagaaaagataagactaaacaccaaggtttcgttgatcctagtaaaattagacctaaccaaaagatcaaattaaacaccgatgtttcattg 6948580  T
Q  320 atccgagtaaaatttcgtctcaggtagtgactaattaccggcaaagtcggtgcacaactgttacaatacataaccaaaagattaagaaaaagaccaaatt 419  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948579 atccgagtaaaattttgtctcaggtagtgactaattaccggcaaagtcggtgcacaactgttacaatacataaccaaaagattaagaaaaagaccaaatt 6948480  T
Q  420 aaagaaattgtaccatgagagttattggatgttgatggttggtcagtggttgtggctgtgcgttgctgtgagggtataacaacgccaggccaggagcggc 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948479 aaagaaattgtaccatgagagttattggatgttgatggttggtcagtggttgtggctgtgcgttgctgtgagggtataacaacgccaggccaggagcggc 6948380  T
Q  520 acatacagtgcattccttcatcaatacttctgtagagggtggtcaagtgtttaccacatcctccccatgtatatttcccacaggtagcacattccaacct 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948379 acatacagtgcattccttcatcaatacttctgtagagggtggtcaagtgtttaccacatcctccccatgtatatttcccacaggtagcacattccaacct 6948280  T
Q  620 ataacaca---nnnnnnngcaacccctcaattcagaattgagtattgttgatgttgtttcactcgtagcaatacgatctaactatcttgattttatagtt 716  Q
    ||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948279 ataacacattttttttttgcaacccctcaattcagaattgagtattgttgatgttgtttcactcgtagcaatacgatctaactatcttgattttatagtt 6948180  T
Q  717 acggggtaaatattatattcctatg 741  Q
    | |||||||||||||||||||||||    
T  6948179 aaggggtaaatattatattcctatg 6948155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 28007928 - 28007961
Alignment:
Q  30 tgattttgtcaatctcatcgtcaatccaaacata 63  Q
    |||||||||||||||||||||||||| |||||||    
T  28007928 tgattttgtcaatctcatcgtcaatctaaacata 28007961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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