View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_high_5 (Length: 594)
Name: NF11867_high_5
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 3 - 313
Target Start/End: Complemental strand, 32126365 - 32126057
Alignment:
| Q |
3 |
accagcacagagactttatgagggatcgaattgtgccttgcccataccaataattggtttttatacatttgtatcatgtatatcacaacaaaagttaaac |
102 |
Q |
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| T |
32126365 |
accaacacagagactttatgagggatcaaattgtgcctcgcccataccaataattggtttttatacatttgtatcatgtatatcacaacaaaagttaaac |
32126266 |
T |
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| Q |
103 |
aaagatccacttggaaaagtatatttttccatttcttcatgacactgtaaaatttagcttgatgtttcaaacttcaattcacacaaagttaattgtgaat |
202 |
Q |
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| T |
32126265 |
aaagatccacttggaaaagtatatttttccatttcttcatgacactgtaaaatttagcttgatgtttcaaacttcaattcacacaaagttaattgtgaat |
32126166 |
T |
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| Q |
203 |
gcattcatgtcctttcc-nnnnnnntgttacaagagttagttatttacatttaacaatacaacaactattgttcattacatc-tcattacaggagctctt |
300 |
Q |
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| T |
32126165 |
gcattcatgtcctttccaaaaaaaatgttacaag----agttatttacatttaacaatacaacaaatattgttcattacatcttcattacaggagctctt |
32126070 |
T |
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| Q |
301 |
tacaatgtactcc |
313 |
Q |
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| T |
32126069 |
tacaatgtactcc |
32126057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 367 - 577
Target Start/End: Complemental strand, 32126053 - 32125843
Alignment:
| Q |
367 |
taacataaacaacctggttaaatggatatcaataagttttatgtaattaaataaaatgatacaaattatttatcctcacattgcatttctcagtttgaaa |
466 |
Q |
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| T |
32126053 |
taacataaacaacctggttaaatggatatcaataagttttatgtaattaaataaaatgatacaaattatttatcctcacattgcatttctcagtttgaaa |
32125954 |
T |
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| Q |
467 |
catttcatgaaaattgttcaccatggcattttaatatgaacaagaaatcaattaaaataggtgaatatgaataaagaataaagattgatgtgtatttagg |
566 |
Q |
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| T |
32125953 |
catttcatgaaatttgttcaccatggcattttaatatgaacaagaaatcaattaaaataggtgaatatgaataaagaataaagattgatgtgtatttagg |
32125854 |
T |
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| Q |
567 |
aatgtgaatat |
577 |
Q |
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| T |
32125853 |
aatgtgaatat |
32125843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 517 - 577
Target Start/End: Original strand, 28055118 - 28055178
Alignment:
| Q |
517 |
attaaaataggtgaatatgaataaagaataaagattgatgtgtatttaggaatgtgaatat |
577 |
Q |
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| T |
28055118 |
attaaaataggtgaatgtgaataaagaataaatattgatgtgtatttgggaatgtgaatat |
28055178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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