View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11867_high_6 (Length: 573)

Name: NF11867_high_6
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11867_high_6
NF11867_high_6
[»] chr5 (22 HSPs)
chr5 (47-573)||(8529292-8529818)
chr5 (63-573)||(8535872-8536382)
chr5 (38-573)||(1599525-1600060)
chr5 (38-573)||(9073957-9074486)
chr5 (293-442)||(8547439-8547588)
chr5 (94-273)||(8637275-8637454)
chr5 (64-175)||(8641752-8641863)
chr5 (42-414)||(2856268-2856643)
chr5 (42-414)||(2873878-2874253)
chr5 (45-259)||(9003816-9004028)
chr5 (42-264)||(2844594-2844816)
chr5 (301-414)||(2844435-2844548)
chr5 (216-414)||(2904384-2904585)
chr5 (295-418)||(8644833-8644956)
chr5 (218-261)||(8644744-8644787)
chr5 (216-254)||(11354043-11354081)
chr5 (216-254)||(11373312-11373350)
chr5 (94-161)||(8644620-8644687)
chr5 (94-176)||(8678222-8678305)
chr5 (97-159)||(2904642-2904704)
chr5 (216-249)||(8678348-8678381)
chr5 (304-348)||(9004088-9004132)
[»] chr4 (1 HSPs)
chr4 (47-573)||(9443453-9443979)
[»] chr7 (2 HSPs)
chr7 (47-573)||(48361077-48361603)
chr7 (63-407)||(35780184-35780544)
[»] chr1 (2 HSPs)
chr1 (18-241)||(5131093-5131316)
chr1 (118-174)||(26324131-26324187)
[»] chr6 (2 HSPs)
chr6 (292-443)||(16716982-16717133)
chr6 (217-263)||(16716895-16716941)
[»] scaffold0627 (1 HSPs)
scaffold0627 (301-442)||(5293-5434)


Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 47 - 573
Target Start/End: Original strand, 8529292 - 8529818
Alignment:
47 atccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagag 146  Q
    |||||||||||||   ||||||||||||| ||| |||  || ||||||| |||||| ||| |||||||||||||||||||||| ||   ||||||||| |    
8529292 atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg 8529391  T
147 tgtgtatctcaaggatcacacgctcaaactcccaacgaacggcacgtttaacatgccttacccatgtttttatcaccttatattcattagttttaggttg 246  Q
    ||| ||||||||||||||||||||||||| ||||  ||  |||| |||||||||| |||| |||     |||| ||||||||||||||||||||||||||    
8529392 tgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttg 8529491  T
247 gaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcact 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8529492 gaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcact 8529591  T
347 aatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaaaatctcttttgcaagcaatataaagac 446  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
8529592 attgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaatatctctgttgcaagcaatataaagac 8529691  T
447 tttgtctacccgtataactgttctcgtcgtttttccctgaaactaatctcgcagcacgaaaaggtcgcttggattcattattgatctcgtctcttttatc 546  Q
    | ||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||    
8529692 tctgtctacccctatcactgttctcgtcgtttttccctgaaactaatctggcagcacgaaaagggcgcttggattcattattgatctggtctcttttatc 8529791  T
547 cctaaatgatctgagaggaagcttgaa 573  Q
    |||||||||||||||||||||||||||    
8529792 cctaaatgatctgagaggaagcttgaa 8529818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 63 - 573
Target Start/End: Original strand, 8535872 - 8536382
Alignment:
63 cattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggat 162  Q
    ||||||||||||| ||| |||  || ||||||| |||||| ||| |||||||||||||||||||||| ||    |||||||| |||| |||||||||| |    
8535872 cattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatggggttccaagtgtgtttatctcaagggt 8535971  T
163 cacacgctcaaactcccaacgaacggcacgtttaacatgccttacccatgtttttatcaccttatattcattagttttaggttggaatccaaaaccagct 262  Q
    || |||||||||||||||   |  ||||||||||||||| || |||||  | ||||||||||||||||||||||||||||||||||| ||||||||||||    
8535972 caaacgctcaaactcccacacattggcacgtttaacatgtctcacccacatgtttatcaccttatattcattagttttaggttggaaaccaaaaccagct 8536071  T
263 tgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaag 362  Q
    || ||| || ||||||| ||| || |||  | | ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
8536072 tgtcctagccttcttacccgattttgatccgcaatagattcaggaagtcttataaactccccagtgactgggttgcagatcactaatgggtttccaaaag 8536171  T
363 atgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaaaatctcttttgcaagcaatataaagactttgtctacccgtata 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8536172 atgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaaaatctcttttgcaagcaatataaagactttgtctacccgtata 8536271  T
463 actgttctcgtcgtttttccctgaaactaatctcgcagcacgaaaaggtcgcttggattcattattgatctcgtctcttttatccctaaatgatctgaga 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
8536272 actgttctcgtcgtttttccctgaaactaatctcgcagcacgaaaaggtcgcttggattcattattgatctggtctcttttatccctaaatgatctgaga 8536371  T
563 ggaagcttgaa 573  Q
    |||||||||||    
8536372 ggaagcttgaa 8536382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 38 - 573
Target Start/End: Complemental strand, 1600060 - 1599525
Alignment:
38 tcatatatgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatg 137  Q
    |||||| | |||||||||||||   ||||||||||||| |||  || |||| || ||| |||||| ||| |||||||||||||||||||||| ||   ||    
1600060 tcatatcttatccaatgaagtgcaccattcacacaagtgggattcttaagcatccaaaaagaaatttgaggatccacttcaacatttctccaggatggtg 1599961  T
138 ttccaagagtgtgtatctcaaggatcacacgctcaaactcccaacgaac-ggcacgtttaacatgccttacccatgtttttatcaccttatattcattag 236  Q
    ||||||| |||| ||||||||||||||||  || ||||||| |||| |  ||||||||||||||  || ||||   | ||||||||||||||||||||||    
1599960 ttccaagtgtgtttatctcaaggatcacaatcttaaactcc-aacgcattggcacgtttaacatatctcaccctcatgtttatcaccttatattcattag 1599862  T
237 ttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggtt 336  Q
    ||||||||||||| |||||| ||||| | |||||| ||| ||| |||||| |||| |  ||||||||||||||||||||||||||||| |||| ||||||    
1599861 ttttaggttggaaaccaaaagcagctcgtccttgccttcctacccgagtttgattcgcggtagattcaggaagtcttatgaactccccagtgattgggtt 1599762  T
337 gcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaaaatctcttttgcaagca 436  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||    
1599761 gcagatcactaatgggtttccgaaatatgggtcagacaaacaaagtaaaccattgcaagaattcacaatattaaacttatcaaaatcactgttgcaagca 1599662  T
437 atataaagactttgtctacccgtataactgttctcgtcgtttttccctgaaactaatctcgcagcacgaaaaggtcgcttggattcattattgatctcgt 536  Q
    ||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
1599661 atataaagactttgtctacccgtatcactgttctcatcctttttccccgaaactaatctcgcagcacgaaaagggcgcttggattcattattgatctcgt 1599562  T
537 ctcttttatccctaaatgatctgagaggaagcttgaa 573  Q
    | |||||||||||||||||||||||||||||||||||    
1599561 cacttttatccctaaatgatctgagaggaagcttgaa 1599525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 38 - 573
Target Start/End: Complemental strand, 9074486 - 9073957
Alignment:
38 tcatatatgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatg 137  Q
    |||||| | |||||||||||||   ||||||||||||| ||| |||| || ||| ||| |||||| ||| |||||||||||||||||||| ||     ||    
9074486 tcatatcttatccaatgaagtgcaccattcacacaagtgggatactcgagactcaaaaaagaaatttgaggatccacttcaacatttctcaatattgttg 9074387  T
138 ttccaagagtgtgtatctcaaggatcacacgctcaaactcccaacgaacggcacgtttaacatgccttacccatgtttttatcaccttatattcattagt 237  Q
    ||||||| |||| ||||| |||||||||||| |||              |||||||||| |||| |||| |||  || |||| |||||||||||||||||    
9074386 ttccaagtgtgtttatctgaaggatcacacggtcatt------------ggcacgtttaccatgtcttatccacattcttattaccttatattcattagt 9074299  T
238 tttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttg 337  Q
     ||||||||||||||||||||| |||| |||  ||||||||| ||||||||||| || |||| |||||||||||||||||||||||| ||||||||||||    
9074298 attaggttggaatccaaaaccaacttgtcctaccattcttacccgagttcgattcgtggtagcttcaggaagtcttatgaactcccctgtgactgggttg 9074199  T
338 cagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaaaatctcttttgcaagcaa 437  Q
    ||||||||| | ||||||||   || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | |||||||||     
9074198 cagatcactgaagggtttccggtagttggttcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcataatatttgttgcaagcag 9074099  T
438 tata-----aagactttg-tctacccgtataactgttctcgtcgtttttccctgaaactaatctcgcagcacgaaaaggtcgcttggattcattattgat 531  Q
    ||||     ||   |||| |||| || ||| | ||||||| | ||||||||| ||||||||||| |||||||||| ||| || ||| |||||||| ||||    
9074098 tataactataacggtttgttctatccctatcaatgttctcattgtttttccccgaaactaatcttgcagcacgaacagggcgattgaattcattactgat 9073999  T
532 ctcgtctcttttatccctaaatgatctgagaggaagcttgaa 573  Q
    ||||  ||||||||||||||||||| ||||||||||||||||    
9073998 ctcgcttcttttatccctaaatgatatgagaggaagcttgaa 9073957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 293 - 442
Target Start/End: Complemental strand, 8547588 - 8547439
Alignment:
293 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc 392  Q
    ||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||| ||||||||   || ||| |||||||||||||| || ||| |||    
8547588 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc 8547489  T
393 aagaattcacaatatcaaacttatcaaaatctcttttgcaagcaatataa 442  Q
    ||||||||||||||||||| | ||||  |||||| |||||||||||||||    
8547488 aagaattcacaatatcaaaatgatcacgatctctgttgcaagcaatataa 8547439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 94 - 273
Target Start/End: Original strand, 8637275 - 8637454
Alignment:
94 aatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggatcacacgctcaaactcccaacgaacggcacgt 193  Q
    ||||||||| ||  ||||||||||| |||||||||||||   ||||||||| || | ||||||||||| || ||| |||||| ||||||||  | | |||    
8637275 aatagaaatttggggatccacttcagcatttctccatgatggtgttccaagtgtatatatctcaaggaccatacgatcaaacacccaacgattgcctcgt 8637374  T
194 ttaacatgccttacccatgtttttatcaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcat 273  Q
    |||||||  ||  ||||| || |||||||||||||||||||||||||||||||||| ||||||||| |||| ||| ||||    
8637375 ttaacatcactgccccatattcttatcaccttatattcattagttttaggttggaaaccaaaaccaacttgtcctcgcat 8637454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 8641752 - 8641863
Alignment:
64 attcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggatc 163  Q
    |||||||||||| ||| ||| ||| |||||||||||||||||| |||||||||||||||||||||||||   || |||||| |||| |||||||||||||    
8641752 attcacacaagtgggatacttaagactcgaaatagaaatctgaggatccacttcaacatttctccatgatggtgctccaagtgtgtttatctcaaggatc 8641851  T
164 acacgctcaaac 175  Q
    ||||||||||||    
8641852 acacgctcaaac 8641863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 42 - 414
Target Start/End: Complemental strand, 2856643 - 2856268
Alignment:
42 atatgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttcc 141  Q
    |||| ||||||||||||| | |||||||||| || |||  |  |||| || ||| |||||| ||| |||||||||||||||||||||||||  |||||||    
2856643 atataatccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatgatgttcc 2856544  T
142 aagagtgtgtatctcaaggatcacacgctcaaactcccaacgaacggcacgtttaacatgccttacccatgtttttatcaccttatattcattagtttta 241  Q
     || ||||||||||| || |  |||||||||||| || |||||  | | ||| ||||||   |   |||  || | |||||||||||||||||||||||     
2856543 gagcgtgtgtatctcgagcactacacgctcaaacaccaaacgattgtctcgtctaacatatttgttccacattatgatcaccttatattcattagttttg 2856444  T
242 ggttggaatccaaaaccagcttg--accttgcattcttactcgagttcg-atttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgc 338  Q
    |||||||| ||||||||||||||   ||  ||| | |||  | |||  | | | ||||||  |||||||||| || | || |||| ||| ||||||||||    
2856443 ggttggaaaccaaaaccagcttgtacccgagcactgttaaaccagtcagaagtcgtagtaagttcaggaagtattgtaaattccctcgttactgggttgc 2856344  T
339 agatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaactt 414  Q
    | |||||||| ||| |||| | |||||  ||||| |||||||| || ||||||||||||||||||||  |||||||    
2856343 aaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaatgccaaactt 2856268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 42 - 414
Target Start/End: Complemental strand, 2874253 - 2873878
Alignment:
42 atatgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttcc 141  Q
    |||| ||||||||||||| | |||||||||| || |||  |  |||| || ||| |||||| ||| |||||||||||||||||||||||||   ||||||    
2874253 atataatccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatggtgttcc 2874154  T
142 aagagtgtgtatctcaaggatcacacgctcaaactcccaacgaacggcacgtttaacatgccttacccatgtttttatcaccttatattcattagtttta 241  Q
     || ||||||||||| || |  |||||||||||| || |||||  | | ||| ||||||   |   |||| || | |||||||||||||||||||||||     
2874153 gagcgtgtgtatctcgagcactacacgctcaaacaccaaacgattgtctcgtctaacatatttgttccatattatgatcaccttatattcattagttttg 2874054  T
242 ggttggaatccaaaaccagcttga--ccttgcattcttactcgagttcgattt-gtagtagattcaggaagtcttatgaactcccccgtgactgggttgc 338  Q
    |||||||| | ||||||||||||   ||  ||| | |||  | |||  ||  | ||||||  |||||||||| || |||| |||| ||| ||||||||||    
2874053 ggttggaaactaaaaccagcttgtacccgagcactgttaaaccagtcagaagtcgtagtaagttcaggaagtattgtgaattccctcgttactgggttgc 2873954  T
339 agatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaactt 414  Q
    | |||||||| ||| |||| | |||||  ||||| |||||||| || ||||||||||||||||||||  |||||||    
2873953 aaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaatgccaaactt 2873878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 45 - 259
Target Start/End: Original strand, 9003816 - 9004028
Alignment:
45 tgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaag 144  Q
    ||||||||||||||| | ||||||||||||| ||| | | ||| ||| ||||||| |  ||| |||||||||||||||||||||||||   ||||||       
9003816 tgatccaatgaagtgcgccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcc--c 9003913  T
145 agtgtgtatctcaaggatcacacgctcaaactcccaacgaacggcacgtttaacatgccttacccatgtttttatcaccttatattcattagttttaggt 244  Q
    ||||||||||||||||||| ||||||||||| |  |   |  | ||| | ||||||| ||   |||| |||||||||||||||| |||||||||||||||    
9003914 agtgtgtatctcaaggatcgcacgctcaaacacaaagttattgtcacctctaacatgtctcgtccatatttttatcaccttataatcattagttttaggt 9004013  T
245 tggaatccaaaacca 259  Q
    ||  | |||||||||    
9004014 tgataaccaaaacca 9004028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 42 - 264
Target Start/End: Complemental strand, 2844816 - 2844594
Alignment:
42 atatgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttcc 141  Q
    |||| ||||||||||||| | |||||||||| || |||  |  |||| || ||| |||||| ||| ||||||||||||| |||||||||||   ||||||    
2844816 atataatccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacctttctccatgatggtgttcc 2844717  T
142 aagagtgtgtatctcaaggatcacacgctcaaactcccaacgaacggcacgtttaacatgccttacccatgtttttatcaccttatattcattagtttta 241  Q
    ||| ||||||||||| || |  |||||||||||| || |||||  |   ||| ||||||   |   |||  || | |||||||||||||||||||||||     
2844716 aagcgtgtgtatctcgagcactacacgctcaaacaccaaacgattgtttcgtctaacatatttgttccacattatgatcaccttatattcattagttttg 2844617  T
242 ggttggaatccaaaaccagcttg 264  Q
    |||||||| ||||||||||||||    
2844616 ggttggaaaccaaaaccagcttg 2844594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 301 - 414
Target Start/End: Complemental strand, 2844548 - 2844435
Alignment:
301 ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc 400  Q
    |||||||||| || |||| |||| ||| ||||||||||| |||||||| ||| |||| | |||||  ||||| |||||||| || |||||||||||||||    
2844548 ttcaggaagtattgtgaattccctcgttactgggttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattc 2844449  T
401 acaatatcaaactt 414  Q
    |||||  |||||||    
2844448 acaatgccaaactt 2844435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 216 - 414
Target Start/End: Complemental strand, 2904585 - 2904384
Alignment:
216 ttatcaccttatattcattagttttaggttggaatccaaaaccagcttg--accttgcattcttactcgagttcg-atttgtagtagattcaggaagtct 312  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||   ||  ||| | |||  | |||  | | | ||||||  |||||||||| |    
2904585 ttatcaccttatattcattagttttgggttggaaaccaaaaccagcttgcacccgagcactgttaaaccagtcagaagtcgtagtaagttcaggaagtat 2904486  T
313 tatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaac 412  Q
    | |||| |||| ||| ||||||||||| ||| |||| ||| ||||   |||||  ||||| |||||||| || ||||||||||||||||||||  |||||    
2904485 tgtgaattccctcgttactgggttgcaaatcgctaaagggcttccggtagatgtttcagataaacaaagcaagccattgcaagaattcacaatgccaaac 2904386  T
413 tt 414  Q
    ||    
2904385 tt 2904384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 418
Target Start/End: Original strand, 8644833 - 8644956
Alignment:
295 agtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaa 394  Q
    ||||| || |||||||||||| |||||||| |||||||| ||||| || ||||||||  ||||   | |||| | |  ||||||||| || |||||||||    
8644833 agtagctttaggaagtcttataaactccccagtgactggattgcaaattactaatggtcttccttcaaatggatgacgcaaacaaagcaagccattgcaa 8644932  T
395 gaattcacaatatcaaacttatca 418  Q
    |||||||||| | |||||||||||    
8644933 gaattcacaacaccaaacttatca 8644956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 8644744 - 8644787
Alignment:
218 atcaccttatattcattagttttaggttggaatccaaaaccagc 261  Q
    |||||||||||||||||||||||||||||||| |||||| ||||    
8644744 atcaccttatattcattagttttaggttggaagccaaaagcagc 8644787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 11354081 - 11354043
Alignment:
216 ttatcaccttatattcattagttttaggttggaatccaa 254  Q
    |||||||||||||||||||||||||||||||||| ||||    
11354081 ttatcaccttatattcattagttttaggttggaagccaa 11354043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 254
Target Start/End: Original strand, 11373312 - 11373350
Alignment:
216 ttatcaccttatattcattagttttaggttggaatccaa 254  Q
    |||||||||||||||||||||||||||||||||| ||||    
11373312 ttatcaccttatattcattagttttaggttggaagccaa 11373350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 8644620 - 8644687
Alignment:
94 aatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaagga 161  Q
    ||||||||| ||| |||| |||||| |||||||||||||   ||||||||| |||| |||||||||||    
8644620 aatagaaatttgaggatctacttcagcatttctccatgatggtgttccaagtgtgtttatctcaagga 8644687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 8678222 - 8678305
Alignment:
94 aatagaaatctgaagatccacttcaacatttctccatgacaatg-ttccaagagtgtgtatctcaaggatcacacgctcaaact 176  Q
    ||||||||| ||| ||||||||||| |||||||||||||   || ||||||  |||| |||||||||||||| ||| |||||||    
8678222 aatagaaatttgaggatccacttcagcatttctccatgatggtgtttccaattgtgtttatctcaaggatcatacgatcaaact 8678305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 2904704 - 2904642
Alignment:
97 agaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaag 159  Q
    |||||| ||| |||||||||||| ||||||||||||   |||||| || ||||||||||||||    
2904704 agaaatttgaggatccacttcaagatttctccatgatgttgttccgagcgtgtgtatctcaag 2904642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 8678348 - 8678381
Alignment:
216 ttatcaccttatattcattagttttaggttggaa 249  Q
    |||||||||| |||||||||||||||||||||||    
8678348 ttatcaccttgtattcattagttttaggttggaa 8678381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 9004088 - 9004132
Alignment:
304 aggaagtcttatgaactcccccgtgactgggttgcagatcactaa 348  Q
    ||||||||||||||| ||||| |||||||||||||| | ||||||    
9004088 aggaagtcttatgaattccccagtgactgggttgcataccactaa 9004132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 47 - 573
Target Start/End: Original strand, 9443453 - 9443979
Alignment:
47 atccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagag 146  Q
    |||||||||||||   ||||||||||||| ||| |||  || ||||||| |||||| ||| |||||||||||||||||||||| ||   ||||||||| |    
9443453 atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg 9443552  T
147 tgtgtatctcaaggatcacacgctcaaactcccaacgaacggcacgtttaacatgccttacccatgtttttatcaccttatattcattagttttaggttg 246  Q
    ||| ||||||||||||||||||||||||| ||||  ||  |||  |||||||||| |||| |||     |||| ||||||||||||||||||||||||||    
9443553 tgtttatctcaaggatcacacgctcaaacacccactgattggcttgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttg 9443652  T
247 gaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcact 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9443653 gaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcact 9443752  T
347 aatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaaaatctcttttgcaagcaatataaagac 446  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||    
9443753 attgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaatatctctgttgcaatcaatataaagac 9443852  T
447 tttgtctacccgtataactgttctcgtcgtttttccctgaaactaatctcgcagcacgaaaaggtcgcttggattcattattgatctcgtctcttttatc 546  Q
    | ||||||||| ||| |||||| |||| ||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||    
9443853 tctgtctacccctatcactgttgtcgttgtttttccctgaaactaatctggcagcacgaaaagggcgcttggattcaatattgatctggtctcttttatc 9443952  T
547 cctaaatgatctgagaggaagcttgaa 573  Q
    |||||||||||||||||||||||||||    
9443953 cctaaatgatctgagaggaagcttgaa 9443979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 47 - 573
Target Start/End: Complemental strand, 48361603 - 48361077
Alignment:
47 atccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagag 146  Q
    |||||||||||||   ||||||||||||| ||| |||| || ||||||| |||||| ||| |||||||||||||||| ||||| ||   ||||||||| |    
48361603 atccaatgaagtgcaccattcacacaagtgggatactcgagactcgaaaaagaaatgtgaggatccacttcaacattcctccaggatggtgttccaagtg 48361504  T
147 tgtgtatctcaaggatcacacgctcaaactcccaacgaacggcacgtttaacatgccttacccatgtttttatcaccttatattcattagttttaggttg 246  Q
    ||| ||||||||||||||||||||||||||||||   |  ||||||||||||||| || |||||  | ||||||||||||||||||||||||||||||||    
48361503 tgtttatctcaaggatcacacgctcaaactcccacgcattggcacgtttaacatgtctcacccacatgtttatcaccttatattcattagttttaggttg 48361404  T
247 gaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcact 346  Q
    ||| |||||||||||||| |||||||||||||| ||||||||||  | |||||||||||||||||||||||||||||| |||||||||||||||||||||    
48361403 gaaaccaaaaccagcttgtccttgcattcttacccgagttcgatacgcagtagattcaggaagtcttatgaactcccctgtgactgggttgcagatcact 48361304  T
347 aatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaaaatctcttttgcaagcaatataaagac 446  Q
    || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
48361303 aacgggtttcccaaagatggatcagacaaacaaagtaaaccattgcaagaattcacaatatcaaacttatcaaaatctctgttgcaagcaatataaagac 48361204  T
447 tttgtctacccgtataactgttctcgtcgtttttccctgaaactaatctcgcagcacgaaaaggtcgcttggattcattattgatctcgtctcttttatc 546  Q
    ||||||||||| ||| ||||||||| || ||||| || ||||||||||| ||||||||||||||  ||||||||||||||||||| ||||||||||||||    
48361203 tttgtctacccctatcactgttctcatcattttttcccgaaactaatcttgcagcacgaaaagggtgcttggattcattattgatatcgtctcttttatc 48361104  T
547 cctaaatgatctgagaggaagcttgaa 573  Q
    |||||||||||||||||||||||||||    
48361103 cctaaatgatctgagaggaagcttgaa 48361077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 63 - 407
Target Start/End: Original strand, 35780184 - 35780544
Alignment:
63 cattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggat 162  Q
    ||||||||||||| ||| ||| ||| || |||||||||||  || |||||||||||||| ||||||||||   || |||||| |||| ||| || |||||    
35780184 cattcacacaagtgggatacttaaggcttgaaatagaaatacgaggatccacttcaacagttctccatgatggtgctccaagtgtgtttatttcgaggat 35780283  T
163 cacacgctcaaactcccaacgaacggcacgtttaacatgccttacccatgtttttatcaccttatattcattagttttaggttggaatccaaaaccagct 262  Q
     ||||| |||||| |||||  |  |||||||| |||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
35780284 aacacgatcaaacacccaatcattggcacgttgaacatgtcttatccatatttttatcaccttatattcattagttttaggttggaaaccaaaaccagct 35780383  T
263 tgaccttgcattcttactcga---gt------tc------gatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcacta 347  Q
    || ||||||||||||||||||   ||      ||      || | ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
35780384 tgtccttgcattcttactcgatccgtatttaatcttaaaggagtcgtagtagcttcaggaagtcttatgaactcccccgtgactgggttgcaaatcacta 35780483  T
348 atggg-tttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatat 407  Q
    | ||| ||| |   | |||| | |||||||||||| ||||||||||||||||| |||||||    
35780484 aagggtttttcggtatatggattagacaaacaaagcaaaccattgcaagaattgacaatat 35780544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 5131093 - 5131316
Alignment:
18 acaatgacctttttccaagatcatatatgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttc 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5131093 acaatgacctttttctaagatcatatatgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttc 5131192  T
118 aacatttctccatgacaatgttccaagagtgtgtatctcaaggatcacacgctcaaactcccaacgaacggcacgtttaacatgccttacccatgttttt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
5131193 aacatttctccatgacaatgttccaagagtgtgtatctcaaggatcacacgctcaaactcccaacgaacggcacgtttaacatgccttacccatattttt 5131292  T
218 atcaccttatattcattagtttta 241  Q
    ||||||||||||||||||||||||    
5131293 atcaccttatattcattagtttta 5131316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 26324187 - 26324131
Alignment:
118 aacatttctccatgacaatgttccaagagtgtgtatctcaaggatcacacgctcaaa 174  Q
    |||||||||||| |||  ||||||||| ||||  ||| |||||||||||||||||||    
26324187 aacatttctccaggacggtgttccaagtgtgttcatcccaaggatcacacgctcaaa 26324131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 292 - 443
Target Start/End: Original strand, 16716982 - 16717133
Alignment:
292 tgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattg 391  Q
    |||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||  |||||||||  || ||| ||||||||||| || || |||||     
16716982 tgtagtagtttcaggaagtcttatgaattcccccatgaatgggttgcagatcactatagggtttccagtagttggttcagacaaacatagcaagccatta 16717081  T
392 caagaattcacaatatcaaacttatcaaaatctcttttgcaagcaatataaa 443  Q
    || ||||||||||||| ||||||||||  ||| || |||| |||||||||||    
16717082 catgaattcacaatattaaacttatcacgatcactgttgccagcaatataaa 16717133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 16716895 - 16716941
Alignment:
217 tatcaccttatattcattagttttaggttggaatccaaaaccagctt 263  Q
    |||||| |||||||||||||||||||| | ||| |||||||||||||    
16716895 tatcactttatattcattagttttaggatagaaaccaaaaccagctt 16716941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 301 - 442
Target Start/End: Original strand, 5293 - 5434
Alignment:
301 ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc 400  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||   || ||| | ||||||||| || || ||||| || ||||||    
5293 ttcaggaagtcttatgaactcccccatgaatgggttgcagatcactaaagggtttccggtagttggttgagacaaacatagcaagccattacaggaattc 5392  T
401 acaatatcaaacttatcaaaatctcttttgcaagcaatataa 442  Q
    ||||||  ||| |||||   |||||| |||||||||||||||    
5393 acaatactaaaattatcgcgatctctattgcaagcaatataa 5434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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